Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5ifeA_

Fold library idPDB HeaderMoleculeTitle
c5ifeA_3.10PDB header: splicingChain: A: PDB Molecule: splicing factor 3b subunit 3;


Added to library: Thu Feb 9 11:44:23 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VDMFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)








S
TTSSS


SS
TTT


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQ
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)

TT

S
SSSTTTT
S
SSS
SSSS
S
TTSS
SBS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTL
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
TTS






TT

SSSS

TTTTS
TTSTTTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence TFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDL
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TTTT
SS


TTSS

TT

SSS




TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence DDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLF
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) S
TTS



SS
TT
TT
S
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) SSS

S
S
SSSS
TTS








S
SS



S

SSSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGET
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)


GGG
B


SS



SSTT
SS


SS

SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTG
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)

STTS


SS

S
SSS
TT
SSS

STT


SSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSM
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) T
TTS

S


SS




SSSSS

TTS
SGGGTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence QALPAQPESLCIVEMFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTGSRPVKLFRVRMQGQEAVLAMSSRS
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)
SS


SSSSSS





S

TTSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence WLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFV
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SSS
BSS


S

SS
SSTT



S

SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence IHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGELAAEMAAAFLNENLPESIFGAPKAGNGQWA
Predicted secondary structure




























































SS confidence





































































Known secondary structure (DSSP)
TTT

T


TT







TT



TTTS





SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence SVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNN
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
SSSS


SS

SSS
S

S
BTTTTB



 .........920.........930.........940.........950.........960.........970.........980
Sequence GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVS
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TB

SS
TTTT

SSS



SS


SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDNGASQK
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) SSB
TTTTSS
B

SSSTTS

TT

S




SSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGR
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
SS
SSTTS
TTS



SSS

TTS
 .........1130.........1140.........1150.........1160.........1170.........1180....
Sequence DHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYAFDYKDD
Predicted secondary structure



















SS confidence































































Known secondary structure (DSSP)
TSSS

BSGGGGGS
TTS
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg

Disclaimer

Terms and Conditions