PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5graA_

Fold library id	PDB Header	Molecule	Title
c5graA_	3.01	PDB header: transferase	Chain: A: PDB Molecule: trna (cytidine/uridine-2'-o-)-methyltransferase trmj;

Links to external resources
Added to library: Sat Jun 24 08:28:09 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V P A I I L V R P Q L G E N I G K A A R A M L N F G L D D L R L V A P R D G W P N P S A G P A A S G A D R V L Q Q A R V F P T V A E A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T T
S
T T T T T
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D C A H V Y A T T V R K R G V T K P V M T P E Q A A Q T I H E Q E G G V G I L F G P E R A G L E T D D V A L A R T I I T V P V N P E F S S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S S
S
T T T
S S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L A Q A V I L V A Y E W S K G Q D M E P P A P Q E E L E A M I G H L E N M L D K N G Y F F P I P R I P T I K R T L R T L L T K P S W N S M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
T T T T
S G G G T T
B

. . . . . . . . . 220 . . . .

Sequence E I R T L R G V L S T L E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	P	A	I	I	L	V	R	P	Q	L	G	E	N	I	G	K	A	A	R	A	M	L	N	F	G	L	D	D	L	R	L	V	A	P	R	D	G	W	P	N	P	S	A	G	P	A	A	S	G	A	D	R	V	L	Q	Q	A	R	V	F	P	T	V	A	E	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S																	T	T								S		T	T		S			T	T						T	T	T											S	S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	C	A	H	V	Y	A	T	T	V	R	K	R	G	V	T	K	P	V	M	T	P	E	Q	A	A	Q	T	I	H	E	Q	E	G	G	V	G	I	L	F	G	P	E	R	A	G	L	E	T	D	D	V	A	L	A	R	T	I	I	T	V	P	V	N	P	E	F	S	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S							S	S			S	S																			S									T	T	T										S	S									G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	A	Q	A	V	I	L	V	A	Y	E	W	S	K	G	Q	D	M	E	P	P	A	P	Q	E	E	L	E	A	M	I	G	H	L	E	N	M	L	D	K	N	G	Y	F	F	P	I	P	R	I	P	T	I	K	R	T	L	R	T	L	L	T	K	P	S	W	N	S	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S							B																				T	T	T	T		S	G	G	G														T	T			B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	E	I	R	T	L	R	G	V	L	S	T	L	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)