PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5b83A_

Fold library id	PDB Header	Molecule	Title
c5b83A_	2.69	PDB header: signaling protein	Chain: A: PDB Molecule: tetra ubiquitin;

Links to external resources
Added to library: Thu Feb 9 18:23:56 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Q I F V K T L T G K T I T L E V E P S D T I E N V K A K I Q D K E G I P P D Q Q R L I F A G K Q L E D G R T L S D Y N I Q K E S T L H L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S B T T T
G G G T T
T T S B G G G S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L R L R G G M Q I F V K T L T G K T I T L E V E P S D T I E N V K A K I Q D K E G I P P D Q Q R L I F A G K Q L E D G R T L S D Y N I Q K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T S
T T
B
G G G T T
T T S B T T T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S T L H L V L R L R G G M Q I F V K T L T G K T I T L E V E P S D T I E N V K A K I Q D K E G I P P D Q Q R L I F A G K Q L E D G R T L S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T
B
G G G T T
T T
B T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y N I Q K E S T L H L V L R L R G G M Q I F V K T L T G K T I T L E V E P S D T I E N V K A K I Q D K E G I P P D Q Q R L I F A G K Q L E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
S
S S S
T T
B
G G G T T
T

. . . . . . . . . 290 . . . . . . . . . 300 . .

Sequence G R T L S D Y N I Q K E S T L H L V L R L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B T G G G T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Q	I	F	V	K	T	L	T	G	K	T	I	T	L	E	V	E	P	S	D	T	I	E	N	V	K	A	K	I	Q	D	K	E	G	I	P	P	D	Q	Q	R	L	I	F	A	G	K	Q	L	E	D	G	R	T	L	S	D	Y	N	I	Q	K	E	S	T	L	H	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T										T	T	S	B										T	T	T				G	G	G						T	T					T	T	S	B	G	G	G	S				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	R	L	R	G	G	M	Q	I	F	V	K	T	L	T	G	K	T	I	T	L	E	V	E	P	S	D	T	I	E	N	V	K	A	K	I	Q	D	K	E	G	I	P	P	D	Q	Q	R	L	I	F	A	G	K	Q	L	E	D	G	R	T	L	S	D	Y	N	I	Q	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			S								T	T	S									T	T		B																G	G	G						T	T					T	T	S	B	T	T	T	T	T			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	T	L	H	L	V	L	R	L	R	G	G	M	Q	I	F	V	K	T	L	T	G	K	T	I	T	L	E	V	E	P	S	D	T	I	E	N	V	K	A	K	I	Q	D	K	E	G	I	P	P	D	Q	Q	R	L	I	F	A	G	K	Q	L	E	D	G	R	T	L	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T									T	T	S									T	T		B																G	G	G						T	T					T	T		B	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	N	I	Q	K	E	S	T	L	H	L	V	L	R	L	R	G	G	M	Q	I	F	V	K	T	L	T	G	K	T	I	T	L	E	V	E	P	S	D	T	I	E	N	V	K	A	K	I	Q	D	K	E	G	I	P	P	D	Q	Q	R	L	I	F	A	G	K	Q	L	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			T	T									S			S								S	S	S									T	T		B																G	G	G						T	T					T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Sequence	G	R	T	L	S	D	Y	N	I	Q	K	E	S	T	L	H	L	V	L	R	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		B	T	G	G	G	T			T	T