PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5b70B_

Fold library id	PDB Header	Molecule	Title
c5b70B_	2.30	PDB header: transcription	Chain: B: PDB Molecule: lysr family transcriptional regulator;

Links to external resources
Added to library: Sat Mar 18 09:38:20 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A M E L G D S M Q G Q L K L G C I P T I A P F L L C D L V Q E I N Q R F P Q L N L L L R E D T T T N L L T A L R H G E L D V L I L A L P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T T S T T
T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E I D G M E S R V V G Q D P F K M V I S R H Q A G A I K V P I K Y D D L P D E S V F L L E K G H C L T E H A V S A C K L T D K E K I N P F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T T T S
S S
G G G S
T T
T T
T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A T S L H T L V Q M V A N G L G T T F I P Q M A I D H G L L D N Q N L V V I E P P G Q Q A Y R D I G L V W R P S S S R S K T F N Q L A E V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S
B T T T T T T T
S S S
T T
S

. . . .

Sequence S E L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	M	E	L	G	D	S	M	Q	G	Q	L	K	L	G	C	I	P	T	I	A	P	F	L	L	C	D	L	V	Q	E	I	N	Q	R	F	P	Q	L	N	L	L	L	R	E	D	T	T	T	N	L	L	T	A	L	R	H	G	E	L	D	V	L	I	L	A	L	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S					T	T										T	T	T																S	T	T																			T	T	S		S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	I	D	G	M	E	S	R	V	V	G	Q	D	P	F	K	M	V	I	S	R	H	Q	A	G	A	I	K	V	P	I	K	Y	D	D	L	P	D	E	S	V	F	L	L	E	K	G	H	C	L	T	E	H	A	V	S	A	C	K	L	T	D	K	E	K	I	N	P	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S																	T	T	T	T	T	T	S		S	S			G	G	G	S		T	T							T	T											T	T				G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	T	S	L	H	T	L	V	Q	M	V	A	N	G	L	G	T	T	F	I	P	Q	M	A	I	D	H	G	L	L	D	N	Q	N	L	V	V	I	E	P	P	G	Q	Q	A	Y	R	D	I	G	L	V	W	R	P	S	S	S	R	S	K	T	F	N	Q	L	A	E	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S										T	T	S		B											T	T	T	T	T	T	T							S	S	S												T	T		S
	.	.	.	.
Sequence	S	E	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T