PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3md3A_

Fold library id	PDB Header	Molecule	Title
c3md3A_	PDB header: rna binding protein	Chain: A: PDB Molecule: nuclear and cytoplasmic polyadenylated rna-binding protein	PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)

Links to external resources
Added to library: Sat Aug 28 16:47:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R V L Y V G N L D K A I T E D I L K Q Y F Q V G G P I A N I K I M I D K N K N V N Y A F V E Y H Q S H D A N I A L Q T L N G K Q I E N N I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G S
S S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K I N W A F Q S Q Q S S S D D T F N L F V G D L N V N V D D E T L R N A F K D F P S Y L S G H V M W D M Q T G S S R G Y G F V S F T S Q D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
T T S T T
T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . .

Sequence A Q N A M D S M Q G Q D L N G R P L R I N W A A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	V	L	Y	V	G	N	L	D	K	A	I	T	E	D	I	L	K	Q	Y	F	Q	V	G	G	P	I	A	N	I	K	I	M	I	D	K	N	K	N	V	N	Y	A	F	V	E	Y	H	Q	S	H	D	A	N	I	A	L	Q	T	L	N	G	K	Q	I	E	N	N	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T											G	G	G	S																							S	S												T	T				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	I	N	W	A	F	Q	S	Q	Q	S	S	S	D	D	T	F	N	L	F	V	G	D	L	N	V	N	V	D	D	E	T	L	R	N	A	F	K	D	F	P	S	Y	L	S	G	H	V	M	W	D	M	Q	T	G	S	S	R	G	Y	G	F	V	S	F	T	S	Q	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T								S			T	T											T	T	S	T	T										T	T	T												S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Sequence	A	Q	N	A	M	D	S	M	Q	G	Q	D	L	N	G	R	P	L	R	I	N	W	A	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T				T	T								S