PHYRE Protein Fold Recognition Server

Subscribe to Phyre at Google Groups

Email:

Visit Phyre at Google Groups

Follow @Phyre2server

Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3l6yE_

Fold library id	PDB Header	Molecule	Title
c3l6yE_	PDB header: cell adhesion	Chain: E: PDB Molecule: catenin delta-1;	PDBTitle: crystal structure of p120 catenin in complex with e-cadherin

Links to external resources
Added to library: Thu Jan 10 03:22:03 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P P P N W R Q P E L P E V I A M L G F R L D A V K S N A A A Y L Q H L C Y R N D K V K T D V R K L K G I P V L V G L L D H P K K E V H L G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T
T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C G A L K N I S F G R D Q D N K I A I K N C D G V P A L V R L L R K A R D M D L T E V I T G T L W N L S S H D S I K M E I V D H A L H A L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
T T
S T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D E V I I P H S G W E R E P R H I E W E S V L T N T A G C L R N V S S E R S E A R R K L R E C D G L V D A L I F I V Q A E I G Q K D S D S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T S S
T S T T T T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L V E N C V C L L R N L S Y Q V H R E I P Q A E R Y S P A R G Y E L L F Q P E V V R I Y I S L L K E S K T P A I L E A S A G A I Q N L C A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T
G G G G G G S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R W T Y G R Y I R S A L R Q E K A L S A I A D L L T N E H E R V V K A A S G A L R N L A V D A R N K E L I G K H A I P N L V K N L P N F S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T S G G G
S
G G G
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . .

Sequence D T V I S I L N T I N E V I A E G I E K L V L I N K S R S E K E V R A A A L V L Q T I W G Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	P	P	N	W	R	Q	P	E	L	P	E	V	I	A	M	L	G	F	R	L	D	A	V	K	S	N	A	A	A	Y	L	Q	H	L	C	Y	R	N	D	K	V	K	T	D	V	R	K	L	K	G	I	P	V	L	V	G	L	L	D	H	P	K	K	E	V	H	L	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	S	S																	T	T											T	T									T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	G	A	L	K	N	I	S	F	G	R	D	Q	D	N	K	I	A	I	K	N	C	D	G	V	P	A	L	V	R	L	L	R	K	A	R	D	M	D	L	T	E	V	I	T	G	T	L	W	N	L	S	S	H	D	S	I	K	M	E	I	V	D	H	A	L	H	A	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	S	S											T	T														S																T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	E	V	I	I	P	H	S	G	W	E	R	E	P	R	H	I	E	W	E	S	V	L	T	N	T	A	G	C	L	R	N	V	S	S	E	R	S	E	A	R	R	K	L	R	E	C	D	G	L	V	D	A	L	I	F	I	V	Q	A	E	I	G	Q	K	D	S	D	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T						T							S																		T	S	S										T	S	T	T														T	T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	V	E	N	C	V	C	L	L	R	N	L	S	Y	Q	V	H	R	E	I	P	Q	A	E	R	Y	S	P	A	R	G	Y	E	L	L	F	Q	P	E	V	V	R	I	Y	I	S	L	L	K	E	S	K	T	P	A	I	L	E	A	S	A	G	A	I	Q	N	L	C	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T					S	T	T									G	G	G	G	G	G	S																																	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	W	T	Y	G	R	Y	I	R	S	A	L	R	Q	E	K	A	L	S	A	I	A	D	L	L	T	N	E	H	E	R	V	V	K	A	A	S	G	A	L	R	N	L	A	V	D	A	R	N	K	E	L	I	G	K	H	A	I	P	N	L	V	K	N	L	P	N	F	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S											T	S										G	G	G		S																G	G	G		S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Sequence	D	T	V	I	S	I	L	N	T	I	N	E	V	I	A	E	G	I	E	K	L	V	L	I	N	K	S	R	S	E	K	E	V	R	A	A	A	L	V	L	Q	T	I	W	G	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T												T																		T	T