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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3k2sA_

Fold library idPDB HeaderMoleculeTitle
c3k2sA_UNKPDB header: lipid binding proteinChain: A: PDB Molecule: apolipoprotein a-i;


Added to library: Sat Apr 24 08:34:24 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQE
Predicted secondary structure




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Known secondary structure (DSSP)


SSTT
SSTTSTTTTTTTTGGGSSTTTGGG





SSTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEK
Predicted secondary structure
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Known secondary structure (DSSP) TTTTTTTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPA
Predicted secondary structure
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Known secondary structure (DSSP) TTTTTTTS





SSGGGS





T
TTGG
 .........220.........230.........240...
Sequence LEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ
Predicted secondary structure

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Known secondary structure (DSSP) GTTTTTTTTT



SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg

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