PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2db0B_

Fold library id	PDB Header	Molecule	Title
c2db0B_	PDB header: protein binding	Chain: B: PDB Molecule: 253aa long hypothetical protein;	PDBTitle: crystal structure of ph0542

Links to external resources
Added to library: Tue Mar 16 12:54:52 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I R E A L A N G E H L E K I L I M A K Y D E S V L K K L I E L L D D D L W T V V K N A I S I I M V I A K T R E D L Y E P M L K K L F S L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S G G G
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K K S E A I P L T Q E I A K A F G Q M A K E K P E L V K S M I P V L F A N Y R I G D E K T K I N V S Y A L E E I A K A N P M L M A S I V R D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F M S M L S S K N R E D K L T A L N F I E A M G E N S F K Y V N P F L P R I I N L L H D G D E I V R A S A V E A L V H L A T L N D K L R K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
S S T T
T T T G G G G G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence V I K R L E E L N D T S S L V N K T V K E G I S R L L L L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	R	E	A	L	A	N	G	E	H	L	E	K	I	L	I	M	A	K	Y	D	E	S	V	L	K	K	L	I	E	L	L	D	D	D	L	W	T	V	V	K	N	A	I	S	I	I	M	V	I	A	K	T	R	E	D	L	Y	E	P	M	L	K	K	L	F	S	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S																								T	T		S	S															G	G	G		G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	K	S	E	A	I	P	L	T	Q	E	I	A	K	A	F	G	Q	M	A	K	E	K	P	E	L	V	K	S	M	I	P	V	L	F	A	N	Y	R	I	G	D	E	K	T	K	I	N	V	S	Y	A	L	E	E	I	A	K	A	N	P	M	L	M	A	S	I	V	R	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																			T	T	T					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	M	S	M	L	S	S	K	N	R	E	D	K	L	T	A	L	N	F	I	E	A	M	G	E	N	S	F	K	Y	V	N	P	F	L	P	R	I	I	N	L	L	H	D	G	D	E	I	V	R	A	S	A	V	E	A	L	V	H	L	A	T	L	N	D	K	L	R	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G		S	S												T	T			T	T	T					G	G	G						G	G	G	G		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	V	I	K	R	L	E	E	L	N	D	T	S	S	L	V	N	K	T	V	K	E	G	I	S	R	L	L	L	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T				S																	T	T