PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2cjkA_

Fold library id	PDB Header	Molecule	Title
c2cjkA_	PDB header: rna-binding protein	Chain: A: PDB Molecule: nuclear polyadenylated rna-binding protein 4;	PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna

Links to external resources
Added to library: Tue Mar 16 12:43:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K E S C K M F I G G L N W D T T E D N L R E Y F G K Y G T V T D L K I M K D P A T G R S R G F G F L S F E K P S S V D E V V K T Q H I L D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
T T
T T T
T T T S S
S
S S T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K V I D P K R A I P R D E Q D K T G K I F V G G I G P D V R P K E F E E F F S Q W G T I I D A Q L M L D K D T G Q S R G F G F V T Y D S A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
S
S S S S S T T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . .

Sequence A V D R V C Q N K F I D F K D R K I E I K R A E P R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	E	S	C	K	M	F	I	G	G	L	N	W	D	T	T	E	D	N	L	R	E	Y	F	G	K	Y	G	T	V	T	D	L	K	I	M	K	D	P	A	T	G	R	S	R	G	F	G	F	L	S	F	E	K	P	S	S	V	D	E	V	V	K	T	Q	H	I	L	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G						S			T	T											T	T	T												T	T	T	S	S			S							S	S	T									S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	V	I	D	P	K	R	A	I	P	R	D	E	Q	D	K	T	G	K	I	F	V	G	G	I	G	P	D	V	R	P	K	E	F	E	E	F	F	S	Q	W	G	T	I	I	D	A	Q	L	M	L	D	K	D	T	G	Q	S	R	G	F	G	F	V	T	Y	D	S	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											T	T												T	T	S			S							S	S	S	S	S	T	T	S								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Sequence	A	V	D	R	V	C	Q	N	K	F	I	D	F	K	D	R	K	I	E	I	K	R	A	E	P	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S				S	S	S	S