Phyre 2 Results for C6Y4C4

Email	l.a.kelley@imperial.ac.uk
Description	C6Y4C4
Date	Sun Jul 8 11:45:09 BST 2012
Unique Job ID	f05e00b5f80ceeb9

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c2k5kA_

Top template information

PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rhr2;
PDBTitle: solution structure of rhr2 from rhodobacter sphaeroides.2 northeast structural genomics consortium

Confidence and coverage

Confidence:

99.4%

Coverage:

33%

33 residues ( 33% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Warning: 85% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M F N R N L R A V I L K N Y N K A L T R C L H D A G N L K R P T P P R L P K E Q Q E E W D R L Q K E S S K R P V D V M R

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100

Sequence R E K H K D F E G D V N P K T G E I G G P K S E P T V H G D Y S Y E G R V T D F

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?
?
? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 2k5k chain A

Region: 68 - 100
Aligned: 33
Modelled: 33
Confidence: 99.4%
Identity: 33%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rhr2;
PDBTitle: solution structure of rhr2 from rhodobacter sphaeroides.2 northeast structural genomics consortium

Phyre2

PDB 2kaf chain A

Region: 88 - 100
Aligned: 13
Modelled: 13
Confidence: 13.1%
Identity: 38%
PDB header:viral protein, rna binding protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: solution structure of the sars-unique domain-c from the2 nonstructural protein 3 (nsp3) of the severe acute3 respiratory syndrome coronavirus

Phyre2

PDB 2axt chain O domain 1

Region: 71 - 80
Aligned: 10
Modelled: 10
Confidence: 12.3%
Identity: 60%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: PsbO-like

Phyre2

c2k5kA_

c2kafA_

d2axto1