Documentation and Tutorials
Example PPINs, relating BLAST scores and gene annotations are available for download in Downloads section.
PPI data file format:
Tab-delimitted file containing two columnms ID1 ID2 ID3 ID2 ... where ID1, ID2, ID3 are the string identifying the protein names in the species
BLAST data file:
This file contains the result of the all-against-all BLAST results of proteins in the input species. This includes the BLAST results of the proteins within each species as well as with those in the other species. The self-BLAST score of each protein is required so that a normalization on the sequence similarity score to be accurately computed.
The format of the BLAST data file is as below:
ID1 ID2 BLAST-score
where ID1, ID2 are protein IDs of the input species, and BLAST-score is the score obtained from the BLAST sequence alignment result.
GO annotation file format:
The annotation file has the format following the GO consortium file format