Pairing subgrapHs Using NetworK Environment Equivalence


The PHUNKEE server compares pairs of biological networks and locates similar subgraphs of a given size. Subgraph similarity is determined by the comparison of the subgraphs network context. The list of statistically significant similar subgraphs are returned with their functions.

Further descriptions of the terms and parameters used can be found by clicking on the links provided throughout the website.

Compare networks

Two types of biological network can be compared here:

Metabolic networks

Protein interaction networks


Structural Bioinformatics Group
Division of Molecular Biosciences
Imperial College, London