PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d3enba1

Fold library id	Fold	Superfamily	Family
d3enba1	Ribonuclease H-like motif	Ribonuclease H-like	Prp8 beta-finger domain-like

Links to external resources
Added to library: Tue Mar 16 13:02:28 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L F S N Q I I W F V D D T N V Y R V T I H K T F E G N L T T K P I N G A I F I F N P R T G Q L F L K I I H T S V W A G Q K R L G Q L A K W K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T S S
T T S
T T T
G G G
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T A E E V A A L I R S L P V E E Q P K Q I I V T R K G M L D P L E V H L L D F P N I V I K G S E L Q L P F Q A C L K V E K F G D L I L K A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S
S S S G G G T T T
T T
G G G G G G S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E P Q M V L F N L Y D D W L K T I S S Y T A F S R L I L I L R A L H V N N D R A K V I L K P D K T T I T E P H H I W P T L T D E E W I K V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T G G G T S
T
S T T
T T
S S

. . . . . . . . .

Sequence V Q L K D L I L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	F	S	N	Q	I	I	W	F	V	D	D	T	N	V	Y	R	V	T	I	H	K	T	F	E	G	N	L	T	T	K	P	I	N	G	A	I	F	I	F	N	P	R	T	G	Q	L	F	L	K	I	I	H	T	S	V	W	A	G	Q	K	R	L	G	Q	L	A	K	W	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S								T	T	S	S								T	T	S																T	T	T										G	G	G			S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	A	E	E	V	A	A	L	I	R	S	L	P	V	E	E	Q	P	K	Q	I	I	V	T	R	K	G	M	L	D	P	L	E	V	H	L	L	D	F	P	N	I	V	I	K	G	S	E	L	Q	L	P	F	Q	A	C	L	K	V	E	K	F	G	D	L	I	L	K	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		G	G	G	S		S					S	S	G	G	G								T	T	T		T	T												G	G	G	G	G	G	S											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	P	Q	M	V	L	F	N	L	Y	D	D	W	L	K	T	I	S	S	Y	T	A	F	S	R	L	I	L	I	L	R	A	L	H	V	N	N	D	R	A	K	V	I	L	K	P	D	K	T	T	I	T	E	P	H	H	I	W	P	T	L	T	D	E	E	W	I	K	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								T	T	T	T	G	G	G	T	S																											T			S	T	T					T	T		S	S
	.	.	.	.	.	.	.	.	.
Sequence	V	Q	L	K	D	L	I	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)