PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d3d24a1

Fold library id	Fold	Superfamily	Family
d3d24a1	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain

Links to external resources
Added to library: Tue Mar 16 12:59:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V N A L V S H L L V V E P E K L Y A M P A V A T L C D L F D R E I V V T I S W A K S I P G F S S L S L S D Q M S V L Q S V W M E V L V L G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Q R S L P L Q D E L A F A E D L V L D E E G A R A A G L G E L G A A L L Q L V R R L Q A L R L E R E E Y V L L K A L A L A N S D S V H I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S T T T T
T T T T T
T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence D A E A V E Q L R E A L H E A L L E Y E A G E R R R A G R L L L T L P L L R Q T A G K V L A H F Y G V K L E G K V P M H K L F L E M L E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	N	A	L	V	S	H	L	L	V	V	E	P	E	K	L	Y	A	M	P	A	V	A	T	L	C	D	L	F	D	R	E	I	V	V	T	I	S	W	A	K	S	I	P	G	F	S	S	L	S	L	S	D	Q	M	S	V	L	Q	S	V	W	M	E	V	L	V	L	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T																																S	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Q	R	S	L	P	L	Q	D	E	L	A	F	A	E	D	L	V	L	D	E	E	G	A	R	A	A	G	L	G	E	L	G	A	A	L	L	Q	L	V	R	R	L	Q	A	L	R	L	E	R	E	E	Y	V	L	L	K	A	L	A	L	A	N	S	D	S	V	H	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	S	S						T	T											T	T		T	T														T	T	T																T				T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	D	A	E	A	V	E	Q	L	R	E	A	L	H	E	A	L	L	E	Y	E	A	G	E	R	R	R	A	G	R	L	L	L	T	L	P	L	L	R	Q	T	A	G	K	V	L	A	H	F	Y	G	V	K	L	E	G	K	V	P	M	H	K	L	F	L	E	M	L	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T											T	T																					S			S