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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | Fold | Superfamily | Family |
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d1yc611 | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Bromoviridae-like VP |
Added to library: Tue Mar 16 12:16:48 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | A | A | G | Q | G | K | A | I | K | A | I | A | G | Y | S | I | S | K | W | E | A | S | S | D | A | I | T | A | K | A | T | N | A | M | S | I | T | L | P | H | E | L | S | S | E | K | N | K | E | L | K | V | G | R | V | L | L | W | L | G | L | L | P | S | V | A | G | R | I | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | B | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | S | T | T | T | T | T | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | A | C | V | A | E | K | Q | A | Q | A | E | A | A | F | Q | V | A | L | A | V | A | D | S | S | K | E | V | V | A | A | M | Y | T | D | A | F | R | G | A | T | L | G | D | L | L | N | L | Q | I | Y | L | Y | A | S | E | A | V | P | A | K | A | V | V | V | H | L | E | V | E | H |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | G | G | G | ![]() | ![]() | ![]() | ![]() | S | ![]() | ![]() | T | T | S | S | S | ![]() | ![]() | ![]() | ![]() | S | S | T | T | T | T | B | T | T | G | G | G | G | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | B | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Sequence | V | R | P | T | F | D | D | F | F | T | P | V | Y | R | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | S | T | T |
Download: | PDB structure | FASTA sequence |
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