PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1yara1

Fold library id	Fold	Superfamily	Family
d1yara1	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits

Links to external resources
Added to library: Tue Mar 16 13:35:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T V F S P D G R L F Q V E Y A R E A V K K G S T A L G M K F A N G V L L I S D K K V R S R L I E Q N S I E K I Q L I D D Y V A A V T S G L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S
T T
T T S
S T T
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D A R V L V D F A R I S A Q Q E K V T Y G S L V N I E N L V K R V A D Q M Q Q Y T Q Y G G V R P Y G V S L I F A G I D Q I G P R L F D C D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T S T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P A G T I N E Y K A T A I G S G K D A V V S F L E R E Y K E N L P E K E A V T L G I K A L K S S L E E G E E L K A P E I A S I T V G N K Y R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S T T
T T
T S
S S
T T S

. . . . . . . . . 220 .

Sequence I Y D Q E E V K K F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	V	F	S	P	D	G	R	L	F	Q	V	E	Y	A	R	E	A	V	K	K	G	S	T	A	L	G	M	K	F	A	N	G	V	L	L	I	S	D	K	K	V	R	S	R	L	I	E	Q	N	S	I	E	K	I	Q	L	I	D	D	Y	V	A	A	V	T	S	G	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S													T	T	S									T	T													T	T	S		S	T	T			S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	A	R	V	L	V	D	F	A	R	I	S	A	Q	Q	E	K	V	T	Y	G	S	L	V	N	I	E	N	L	V	K	R	V	A	D	Q	M	Q	Q	Y	T	Q	Y	G	G	V	R	P	Y	G	V	S	L	I	F	A	G	I	D	Q	I	G	P	R	L	F	D	C	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S	S																		T	T	T	S	T	T															S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	A	G	T	I	N	E	Y	K	A	T	A	I	G	S	G	K	D	A	V	V	S	F	L	E	R	E	Y	K	E	N	L	P	E	K	E	A	V	T	L	G	I	K	A	L	K	S	S	L	E	E	G	E	E	L	K	A	P	E	I	A	S	I	T	V	G	N	K	Y	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T							S					S	T	T														T	T																	T	S		S	S													T	T	S
	.	.	.	.	.	.	.	.	.	220	.
Sequence	I	Y	D	Q	E	E	V	K	K	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T