PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1urja_

Fold library id	Fold	Superfamily	Family
d1urja_	Viral ssDNA binding protein	Viral ssDNA binding protein	Viral ssDNA binding protein

Links to external resources
Added to library: Tue Mar 16 14:41:06 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T I K V P P G P L G Y V Y A R A C P S E G I E L L A L L S A R S G D S D V A V A P L V V G L T V E S G F E A N V A V V V G S R T T A V S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S S T S B
B T T
S
B T T T B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K L T P S H Y S S S V Y V F H G G R H L D P S T Q A P N L T R L C E R A R R H F G F S D Y T P R P G D L K H E T T G E A L C E R L G L D P D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S
G G G S
S B
T
G G G G G G
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R A L L Y L V V T E G F K E A V C I N N T F L H L G G S D K V T I G G A E V H R I P V Y P L Q L F M P D F S R V I A E P F N A N H R S I G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B T T T T T
G G G
T T G G G G S T T
S
S S T T
T T
T T S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K F T Y P L P F F N R P L N R L L F E A V V G P A A V A L R S R N V D A V A R A A A H L A F D E N H E G A A L P A D I T F T A F A G G F E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
T T T
S
T T
S
S
T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R L A S V M A G D A A L A L E S I V S M A V F D E P P T D I S A W P L F E G Q D T A A A R A N A V G A Y L A R A A G L V G A M V F S T N S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S
B G G G
G G G S S T T S S S T T
T T B T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence L H L T E V D D A G P A H S K P S F Y R F F L V P G T H V A A N P Q V D R E G H V V P G F E G R P T A P L V G G T Q E F A G E H L A M L S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S
T T T T T S
T T S
B
S T T T T
S S
S
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence F S P A L L A K M L F Y L E R C D G A V I V M D V F R Y V A D S N Q T D V P C N L C T F D T R H A C V H T T L M R L R A R H P K F A S A A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
T T T T S
S
S S
T T T T T T
T G G G
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence G A I G V F G T M N S M Y S D C D V L G N Y A E T Y R A A T E R V M A E L E T L Q Y V D Q A V P T A M G R L E T I I T N R E A L H T V V N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
S T T
S
T T S
T T
T T
T T
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence V R Q V V D R E V E Q L M R N L V E F K F R D G L G E A N H A M S L T L D P Y A C G P C P L L Q L L G R R S N L A V Y Q D L A L S Q C H G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S S
S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence F A G Q S V E G R N F R N Q F Q P V L R R R V M D M F N N G F L S A K T L T V A L S A I C A P S L T A G Q T A P A E S S F E G D V A R V T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
T T T T T T S S S B
B
T T T
S S S
B T T
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence G F P K E L R V K S R V L F S A Y Q K P D K R V D I L L G P L G F L L K Q F H A A I F P N G K P P G S N Q P N P Q W F W T A L Q R N Q L P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
S S
G G G S T T T S T T
T T
S S
T
S
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence R L L S R E D I E T I A F I K K F S L D Y G A I N F I N L A P N N V S E L A M Y Y M A N Q I L R Y C D H S T Y F I N T L T A I I A G S R R P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T
S
S T T
S B
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence P S V Q A A A A W S A Q G G A G L E A G A R A L M D A V D A H P G A W T S M F A S C N L L R P V M A A R P M V V L G L S I S K Y V F Q A G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S G G G G G G
S
S T T T G G G
T T
S
T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence W A S L M G G K N A C P L L I F D R T R K F V L A C P R A G F V C A A S S L C E Q L R G I I S E G G A A V A S S V F V A T V K S L G P R T Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G T
T T
T T
B T T T B
T T S
S
T T S S G G G G

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . .

Sequence Q L Q I E D W L A L L E D E Y L S E E M M E L T A R A L E R G N G E W S T D A A L E V A H E A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S S
T T S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	I	K	V	P	P	G	P	L	G	Y	V	Y	A	R	A	C	P	S	E	G	I	E	L	L	A	L	L	S	A	R	S	G	D	S	D	V	A	V	A	P	L	V	V	G	L	T	V	E	S	G	F	E	A	N	V	A	V	V	V	G	S	R	T	T	A	V	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B							S										S	S	T								S	B		B	T	T		S								B	T	T	T	B		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	L	T	P	S	H	Y	S	S	S	V	Y	V	F	H	G	G	R	H	L	D	P	S	T	Q	A	P	N	L	T	R	L	C	E	R	A	R	R	H	F	G	F	S	D	Y	T	P	R	P	G	D	L	K	H	E	T	T	G	E	A	L	C	E	R	L	G	L	D	P	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							B		S								G	G	G	S			S	B																	T								G	G	G	G	G	G												T			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	A	L	L	Y	L	V	V	T	E	G	F	K	E	A	V	C	I	N	N	T	F	L	H	L	G	G	S	D	K	V	T	I	G	G	A	E	V	H	R	I	P	V	Y	P	L	Q	L	F	M	P	D	F	S	R	V	I	A	E	P	F	N	A	N	H	R	S	I	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								B	T	T	T						T	T						G	G	G							T	T											G	G	G	G	S	T	T			S			S	S	T	T		T	T		T	T	S		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	F	T	Y	P	L	P	F	F	N	R	P	L	N	R	L	L	F	E	A	V	V	G	P	A	A	V	A	L	R	S	R	N	V	D	A	V	A	R	A	A	A	H	L	A	F	D	E	N	H	E	G	A	A	L	P	A	D	I	T	F	T	A	F	A	G	G	F	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T						B														T								T	T		S																T	T			S			S		T	T									S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	L	A	S	V	M	A	G	D	A	A	L	A	L	E	S	I	V	S	M	A	V	F	D	E	P	P	T	D	I	S	A	W	P	L	F	E	G	Q	D	T	A	A	A	R	A	N	A	V	G	A	Y	L	A	R	A	A	G	L	V	G	A	M	V	F	S	T	N	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	S			S	S				B	G	G	G		G	G	G	S	S	T	T	S	S	S	T	T																						T	T	B	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	L	H	L	T	E	V	D	D	A	G	P	A	H	S	K	P	S	F	Y	R	F	F	L	V	P	G	T	H	V	A	A	N	P	Q	V	D	R	E	G	H	V	V	P	G	F	E	G	R	P	T	A	P	L	V	G	G	T	Q	E	F	A	G	E	H	L	A	M	L	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T													S			T	T	S							T	T	T	T	T	S					T	T	S		B		S	T	T	T	T						S	S		S													T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	F	S	P	A	L	L	A	K	M	L	F	Y	L	E	R	C	D	G	A	V	I	V	M	D	V	F	R	Y	V	A	D	S	N	Q	T	D	V	P	C	N	L	C	T	F	D	T	R	H	A	C	V	H	T	T	L	M	R	L	R	A	R	H	P	K	F	A	S	A	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T													T	T					S											T	T	T	T	S			S		S	S			T	T	T	T	T	T									T	G	G	G								S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	G	A	I	G	V	F	G	T	M	N	S	M	Y	S	D	C	D	V	L	G	N	Y	A	E	T	Y	R	A	A	T	E	R	V	M	A	E	L	E	T	L	Q	Y	V	D	Q	A	V	P	T	A	M	G	R	L	E	T	I	I	T	N	R	E	A	L	H	T	V	V	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S			B		S	T	T		S																			T	T	S			T	T		T	T			T	T						S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	V	R	Q	V	V	D	R	E	V	E	Q	L	M	R	N	L	V	E	F	K	F	R	D	G	L	G	E	A	N	H	A	M	S	L	T	L	D	P	Y	A	C	G	P	C	P	L	L	Q	L	L	G	R	R	S	N	L	A	V	Y	Q	D	L	A	L	S	Q	C	H	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T											T	T	S	S		S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	F	A	G	Q	S	V	E	G	R	N	F	R	N	Q	F	Q	P	V	L	R	R	R	V	M	D	M	F	N	N	G	F	L	S	A	K	T	L	T	V	A	L	S	A	I	C	A	P	S	L	T	A	G	Q	T	A	P	A	E	S	S	F	E	G	D	V	A	R	V	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S		T	T		T	T															T	T	T	T	S	S	S								B							B			T	T	T		S	S	S			B	T	T						S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	G	F	P	K	E	L	R	V	K	S	R	V	L	F	S	A	Y	Q	K	P	D	K	R	V	D	I	L	L	G	P	L	G	F	L	L	K	Q	F	H	A	A	I	F	P	N	G	K	P	P	G	S	N	Q	P	N	P	Q	W	F	W	T	A	L	Q	R	N	Q	L	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S						B			S	S				G	G	G	S	T	T							T					S	T	T				T	T		S	S													T		S		S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	R	L	L	S	R	E	D	I	E	T	I	A	F	I	K	K	F	S	L	D	Y	G	A	I	N	F	I	N	L	A	P	N	N	V	S	E	L	A	M	Y	Y	M	A	N	Q	I	L	R	Y	C	D	H	S	T	Y	F	I	N	T	L	T	A	I	I	A	G	S	R	R	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S		T	T																							S				S																	T	T			S	B														S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	P	S	V	Q	A	A	A	A	W	S	A	Q	G	G	A	G	L	E	A	G	A	R	A	L	M	D	A	V	D	A	H	P	G	A	W	T	S	M	F	A	S	C	N	L	L	R	P	V	M	A	A	R	P	M	V	V	L	G	L	S	I	S	K	Y	V	F	Q	A	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	G	G	G	G	G	G		S			S	T	T											T	G	G	G		T	T										S								T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	W	A	S	L	M	G	G	K	N	A	C	P	L	L	I	F	D	R	T	R	K	F	V	L	A	C	P	R	A	G	F	V	C	A	A	S	S	L	C	E	Q	L	R	G	I	I	S	E	G	G	A	A	V	A	S	S	V	F	V	A	T	V	K	S	L	G	P	R	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	G	G	G	T		T	T					T	T										B	T	T	T	B													T	T	S			S												T	T	S	S	G	G	G	G
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
Sequence	Q	L	Q	I	E	D	W	L	A	L	L	E	D	E	Y	L	S	E	E	M	M	E	L	T	A	R	A	L	E	R	G	N	G	E	W	S	T	D	A	A	L	E	V	A	H	E	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G										S	S																			T	T	S	S											T	T