PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: d1t9ba3

Fold library id	Fold	Superfamily	Family
d1t9ba3	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Pyruvate oxidase and decarboxylase PP module

Links to external resources
Added to library: Tue Mar 16 12:56:01 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A Y M E E T P G S K I K P Q T V I K K L S K V A N D T G R H V I V T T G V G Q H Q M W A A Q H W T W R N P H T F I T S G G L G T M G Y G L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
T T
S
S S S
S T T
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A A I G A Q V A K P E S L V I D I D G D A S F N M T L T E L S S A V Q A G T P V K I L I L N N E E Q G M V T Q W Q S L F Y E H R Y S H T H Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S G G G T
S S
S T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L N P D F I K L A E A M G L K G L R V K K Q E E L D A K L K E F V S T K G P V L L E V E V D K K V P V L P M V A G G S G L D E F I N F D P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
B
S S
S S B
T T
T T S
B

. . . . . . . . . 220 . . . . . . .

Sequence V E R Q Q T E L R H K R T G G K H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	Y	M	E	E	T	P	G	S	K	I	K	P	Q	T	V	I	K	K	L	S	K	V	A	N	D	T	G	R	H	V	I	V	T	T	G	V	G	Q	H	Q	M	W	A	A	Q	H	W	T	W	R	N	P	H	T	F	I	T	S	G	G	L	G	T	M	G	Y	G	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T			B															T	T		S								S	S										S				S	T	T							S	S			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	A	I	G	A	Q	V	A	K	P	E	S	L	V	I	D	I	D	G	D	A	S	F	N	M	T	L	T	E	L	S	S	A	V	Q	A	G	T	P	V	K	I	L	I	L	N	N	E	E	Q	G	M	V	T	Q	W	Q	S	L	F	Y	E	H	R	Y	S	H	T	H	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S															G	G	G								T											S	S												S	T	T				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	N	P	D	F	I	K	L	A	E	A	M	G	L	K	G	L	R	V	K	K	Q	E	E	L	D	A	K	L	K	E	F	V	S	T	K	G	P	V	L	L	E	V	E	V	D	K	K	V	P	V	L	P	M	V	A	G	G	S	G	L	D	E	F	I	N	F	D	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T								S															S	S								B		S	S				S	S	B			T	T			T	T	S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	V	E	R	Q	Q	T	E	L	R	H	K	R	T	G	G	K	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T