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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: d1r1a1_

Fold library idFoldSuperfamilyFamily
d1r1a1_Nucleoplasmin-like/VP (viral coat and capsid proteins)Positive stranded ssRNA virusesPicornaviridae-like VP (VP1, VP2, VP3 and VP4)


Added to library: Tue Mar 16 13:40:37 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NYIDEVLNEVLVVPNIKESHHTTSNSAPLLDAAETGHTSNVQPEDAIETRYVITSQTRDEMSIESFLGRS
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Known secondary structure (DSSP)
TT
SSB


B







S

TT


GGGS





S



B



B
SSSS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence GCVHISRIKVDYTDYNGQDINFTKWKITLQEMAQIRRKFELFTYVRFDSEITLVPCIAGRGDDIGHIVMQ
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Known secondary structure (DSSP)

SSSSS
TT
S


S
SSTT
SS





 .........150.........160.........170.........180.........190.........200.........210
Sequence YMYVPPGAPIPSKRNDFSWQSGTNMSIFWQHGQPFPRFSIPFLSIASAYYMFYDGYDGDNTSSKYGSVVT
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Known secondary structure (DSSP)
SSS


SSSS
SGGG
TTS
TTS






SSSSS



BS
SSTT

BSTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NDMGTICSRIVTEKQKLSVVITTHIYHKAKHTKAWCPRPPRAVPYTHSHVTNYMPETGDVTTAIVRRNTI
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Known secondary structure (DSSP)




TT


SS





S


SSSS




SSS



S



S
T
 ...
Sequence TTA
Predicted secondary structure


SS confidence


Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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