PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1cmxa_

Fold library id	Fold	Superfamily	Family
d1cmxa_	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase UCH-L

Links to external resources
Added to library: Tue Mar 16 14:17:19 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R A V V P I E S N P E V F T N F A H K L G L K N E W A Y F D I Y S L T E P E L L A F L P R P V K A I V L L F P I N D V I W F K Q S V K N A C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T B
T T
S S
T T G G G S S
S S
S B T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L Y A I L H S L S N N Q S L L E P G S D L D N F L K S Q S D T S S S K N R F D D V T T D Q F V L N V I K E N V Q T F S T G Q S E A P E A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G B
T T S T S
S S
S T
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A D T N L H Y I T Y V E E N G G I F E L D G R N L S G P L Y L G K S D P T A T D L I E Q E L V R V R V A S Y M E N A N E E D V L N F A M L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S
T T
T T
T T
S S G G G
T

. . . .

Sequence L G P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	A	V	V	P	I	E	S	N	P	E	V	F	T	N	F	A	H	K	L	G	L	K	N	E	W	A	Y	F	D	I	Y	S	L	T	E	P	E	L	L	A	F	L	P	R	P	V	K	A	I	V	L	L	F	P	I	N	D	V	I	W	F	K	Q	S	V	K	N	A	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B																			T	B		T	T									S	S		T	T	G	G	G	S	S		S	S																				S	B	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	Y	A	I	L	H	S	L	S	N	N	Q	S	L	L	E	P	G	S	D	L	D	N	F	L	K	S	Q	S	D	T	S	S	S	K	N	R	F	D	D	V	T	T	D	Q	F	V	L	N	V	I	K	E	N	V	Q	T	F	S	T	G	Q	S	E	A	P	E	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T		G	G	G	B		T	T	S													T	S		S	S				S													T								S	S	S					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	D	T	N	L	H	Y	I	T	Y	V	E	E	N	G	G	I	F	E	L	D	G	R	N	L	S	G	P	L	Y	L	G	K	S	D	P	T	A	T	D	L	I	E	Q	E	L	V	R	V	R	V	A	S	Y	M	E	N	A	N	E	E	D	V	L	N	F	A	M	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S										S	S							T	T		T	T										T	T		S	S	G	G	G																			T
	.	.	.	.
Sequence	L	G	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)