PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1c1ka_

Fold library id	Fold	Superfamily	Family
d1c1ka_	gene 59 helicase assembly protein	gene 59 helicase assembly protein	gene 59 helicase assembly protein

Links to external resources
Added to library: Tue Mar 16 12:42:25 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M I K L R M P A G G E R Y I D G K S V Y K L Y L M I K Q H M N G K Y D V I K Y N W C M R V S D A A Y Q K R R D K Y F F Q K L S E K Y K L K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S
T T T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A L I F I S N L V A N Q D A W I G D I S D A D A L V F Y R E Y I G R L K Q I K F K F E E D I R N I Y Y F S K K V E V S A F K E I F E Y N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G T T T T T
S S G G G G T S
B T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K V Q S S Y I F K L L Q S N I I S F E T F I L L D S F L N I I D K H D E Q T D N L V W N N Y S I K L K A Y R K I L N I D S Q K A K N V F I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T B
T T S S

. . . . . . .

Sequence T V K S C K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	I	K	L	R	M	P	A	G	G	E	R	Y	I	D	G	K	S	V	Y	K	L	Y	L	M	I	K	Q	H	M	N	G	K	Y	D	V	I	K	Y	N	W	C	M	R	V	S	D	A	A	Y	Q	K	R	R	D	K	Y	F	F	Q	K	L	S	E	K	Y	K	L	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		T	T																				T	T	S			T	T	T	T	T	T													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	L	I	F	I	S	N	L	V	A	N	Q	D	A	W	I	G	D	I	S	D	A	D	A	L	V	F	Y	R	E	Y	I	G	R	L	K	Q	I	K	F	K	F	E	E	D	I	R	N	I	Y	Y	F	S	K	K	V	E	V	S	A	F	K	E	I	F	E	Y	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S		G	G	G	T	T														T																			T	T		S	S	G	G	G	G	T	S		B	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	V	Q	S	S	Y	I	F	K	L	L	Q	S	N	I	I	S	F	E	T	F	I	L	L	D	S	F	L	N	I	I	D	K	H	D	E	Q	T	D	N	L	V	W	N	N	Y	S	I	K	L	K	A	Y	R	K	I	L	N	I	D	S	Q	K	A	K	N	V	F	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	B									T	T	S	S
	.	.	.	.	.	.	.
Sequence	T	V	K	S	C	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)