PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1bama_

Fold library id	Fold	Superfamily	Family
d1bama_	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease BamHI

Links to external resources
Added to library: Tue Mar 16 14:21:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E V E K E F I T D E A K E L L S K D K L I Q Q A Y N E V K T S I C S P I W P A T S K T F T I N N T E K N C N G V V P I K E L C Y T L L E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B S T T
S S B
S S T T
B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T Y N W Y R E K P I D V Y K E F I E N S E L K R V G M E F E T G N I S S A H R S M N K L L L G L K H G E I D L A I I L M P I K Q L A Y Y L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S
T T S
S
T T B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence D R V T N F E E L E P Y F E L T E G Q P F I F I G F N A E A Y N S N V P L I P K G S D G M S K R S I K K W K D K V E N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
G G G G G G G T T S
S T T S
S T T S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	V	E	K	E	F	I	T	D	E	A	K	E	L	L	S	K	D	K	L	I	Q	Q	A	Y	N	E	V	K	T	S	I	C	S	P	I	W	P	A	T	S	K	T	F	T	I	N	N	T	E	K	N	C	N	G	V	V	P	I	K	E	L	C	Y	T	L	L	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T																				B	S	T	T		S	S	B					S	S	T	T		B		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	Y	N	W	Y	R	E	K	P	I	D	V	Y	K	E	F	I	E	N	S	E	L	K	R	V	G	M	E	F	E	T	G	N	I	S	S	A	H	R	S	M	N	K	L	L	L	G	L	K	H	G	E	I	D	L	A	I	I	L	M	P	I	K	Q	L	A	Y	Y	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S								T	T												S																		T	T	S		S													T	T	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	D	R	V	T	N	F	E	E	L	E	P	Y	F	E	L	T	E	G	Q	P	F	I	F	I	G	F	N	A	E	A	Y	N	S	N	V	P	L	I	P	K	G	S	D	G	M	S	K	R	S	I	K	K	W	K	D	K	V	E	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S								G	G	G	G	G	G	G	T	T	S										S				T	T	S						S	T	T	S	S														T