Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8si4D_

Fold library idPDB HeaderMoleculeTitle
c8si4D_2.46PDB header: membrane proteinChain: D: PDB Molecule: transient receptor potential cation channel subfamily m


Added to library: Sat May 20 09:30:34 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QKSWIESTLTKRECVYIIPSSKDPHRCLPGCQICQQLVRCFCGRLVKQHACFTASLAMKYSDVKLGEHFN
Predicted secondary structure





















































SS confidence





































































Known secondary structure (DSSP)






B

S

S



SSSSTTTS
TTSSB
TTTTSSSSSS
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence QAIEEWSVEKHTEQSPTDAYGVINFQGGSHSYRAKYVRLSYDTKPEIILQLLLKEWQMELPKLVISVHGG
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) T


TTTS
B



SB





SSS



TT

TTTT




S



 .........150.........160.........170.........180.........190.........200.........210
Sequence MQKFELHPRIKQLLGKGLIKAAVTTGAWILTGGVNTGVAKHVGDALKEHASRSSRKICTIGIAPWGVIEN
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SS




TT

S
SSSTTTTT


TTTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RNDLVGRDVVAPYQTLLNPLSKLNVLNNLHSHFILVDDGTVGKYGAEVRLRRELEKTINQQRIHARIGQG
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)
BSS







TT

S



TT
S

S
SS


SSTTTTTTSBSSTTS
SB
 .........290.........300.........310.........320.........330.........340.........350
Sequence VPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAADLLAYIHKQTEEGGNLPDAAEPDIISTIKK
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)


S

TTTSSS


BBSSSSSS
TT



TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TFNFGQSEAVHLFQTMMECMKKKELITVFHIGSEDHQDIDVAILTALLKGTNASAFDQLILTLAWDRVDI
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)



STT

SSB

B
TTTTSSTTTTSSS


T
 .........430.........440.........450.........460.........470.........480.........490
Sequence AKNHVFVYGQQWLVGSLEQAMLDALVMDRVSFVKLLIENGVSMHKFLTIPRLEELYNTKQGPTNPMLFHL
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTS
SS



SSTT
TT

TTTS

S

SSS

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence IRDVKQGNLPPGYKITLIDIGLVIEYLMGGTYRCTYTRKRFRLIYNSLETKRFPYPLNELLIWACLMKRQ
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTT


SS



ST
TT


TTSS



S
SSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VMARFLWQHGEESMAKALVACKIYRSMAYEAKQSDLVDDTSEELKQYSNDFGQLAVELLEQSFRQDETMA
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) SSS

SS




 .........640.........650.........660.........670.........680.........690.........700
Sequence MKLLTYELKNWSNSTCLKLAVSSRLRPFVAHTCTQMLLSDMWMGRLNMRKNSWYKVILSILVPPAILMLE
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TTS

SSSTT

TT
TSTTB
TTTS
SGGGGGGS
 .........710.........720.........730.........740.........750.........760.........770
Sequence YKTKAEMSHIPQSQDAHQMTMELPITRKFYAFYHAPIVKFWFNTLAYLGFLMLYTFVVLVKMEQLPSVQE
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) B

SGGGTTS
B



TSS


SS

 .........780.........790.........800.........810.........820.........830.........840
Sequence WIVIAYIFTYAIEKVREVFMSEAGKISQKIKVWFSDYFNVSDTIAIISFFVGFGLRFGAKWNYINAYDNH
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TSS
SSTTSSS


SS
GGGS
 .........850.........860.........870.........880.........890.........900.........910
Sequence VFVAGRLIYCLNIIFWYVRLLDFLAVNQQAGPYVMMIGKMVANMFYIVVIMALVLLSFGVPRKAILYPHE
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) TTTSTTT


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence EPSWSLAKDIVFHPYWMIFGEVYAYEIDVCANDSTLPTICGPGTWLTPFLQAVYLFVQYIIMVNLLIAFF
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)
S
TTTTGGGT


TTTSSTTSTT
S
TTS

TTGGGT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NQVYLQVKAISNIVWKYQRYHFIMAYHEKPVLPPPLIILSHIVSLFCCVCKGPKLFLTEEDQKKLHDFEE
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) S
SS
TTT


B



 .........1060.........1070.........1080.........1090.........1100.....
Sequence QCVEMYFDEKDDKFNSGSEERIRVTFERVEQMSIQIKEVGDRVNYIKRSLQSLDS
Predicted secondary structure





SS confidence






















































Known secondary structure (DSSP)
SST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D