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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8p83B_

Fold library idPDB HeaderMoleculeTitle
c8p83B_3.87PDB header: ligaseChain: B: PDB Molecule: e3 ubiquitin-protein ligase ubr5;


Added to library: Sat Jun 17 13:53:10 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNLNSHPPLNVLEQATIKQCVVGPNHAAFLLEDGRVCRI
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Known secondary structure (DSSP)
S

T




GGGGGGSSS

SSTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GFSVQPDRLESPVSLGEDLQWWPDKDGTKFICIGALYSELLAVSSKGELYQWKWSESEPYRNAQNPSLHH
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Known secondary structure (DSSP)






SS


SSTT

TT
SS


BTTBTT
BS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PRATFLGLTNEKIVLLSANSIRATVATENNKVATWVDETLSSVASKLEHTAQTYSELQGERIVSLHCCAL
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Known secondary structure (DSSP) TTTTTSS
TTT


GGGTTTGGGT


TTTTTS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence YTCAQLENSLYWWGVVPFSQRKKMLEKARAKNKKPPNITVGTQVCLRNNPLYHAGAVAFSISAGIPKVGV
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Known secondary structure (DSSP) SS








TT
SS

SB
TT
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LMESVWNMNDSCRFQLRSPKEEEKVNEEQWSLREVVFVEDVKNVPVGKVLKVDGAYVAVKFPGTSSNTNC
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Known secondary structure (DSSP)
S
B

TTS



STTTTTTTT

S


TT
TT

S
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence QNSSGPDADPSSLLQDCRLLRIDELQVVKTGGTPKVPDCFQRTPKKLCIPEKTEILAVNVDSKGVHAVLK
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Known secondary structure (DSSP) TT

STT

GGG

TT
S




S



TT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence TGNWVRYCIFDLATGKAEQENNFPTSSIAFLGQNERNVAIFTAGQESPIILRDGNGTIYPMAKDCMGGIR
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Known secondary structure (DSSP) TT
TTT
S
SS

S
GGG

STT


TTS



B
TTSSB
 .........500.........510.........520.........530.........540.........550.........560
Sequence DPDWLDLPPISSLGMGVHSLINLPANSTIKKKAAVIIMAVEKQTLMQHILRCDYEACRQYLMNLEQAVVL
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Known secondary structure (DSSP)









TTS
TT
SS
S

T
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence EQNLQMLQTFISHRCDGNRNILHACVSVCFPTSNKETKEEEVVESKDRKANAHFILKLLCDSVVLQPYLR
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Known secondary structure (DSSP) T
S

BGGGB
T








TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ELLSAKDARGMTPFMSAVSGRAYPAAITILETAQKIAKAEISSSEKEEDVFMGMVCPSGTNPDDSPLYVL
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Known secondary structure (DSSP)


TTS

TT
TTTSSTS
TT

GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence CCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRTSPTAYCDCWEKCKCKTL
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Known secondary structure (DSSP)



TTT



GGGTB
TT

TTTTTS


S
S


S

TTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence IAGQKSARLDLLYRLLTATNLVTLPNSRGEHLLLFLVQTVARQTVEHCQYRPPDMPDHDLEPPRFAQLAL
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Known secondary structure (DSSP)




SGGG
B
TTS
BTT








S




 .........850.........860.........870.........880.........890.........900.........910
Sequence ERVLQDWNALKSMIMFGSQENKDPLSASSRIGHLLPEEQVYLNQQSGTIRLDCFTHCLIVKCTADILLLD
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Known secondary structure (DSSP) TT
TTTSSSS


SSSS


TTS




T
TT
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence TLLGTLVKELQNKYTPGRREEAIAVTMRFLRSVARVFVILSVEMASSKKKNNFIPQPIGKCKRVFQALLP
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Known secondary structure (DSSP) T
TTSTTB


SS





T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YAVEELCNVAESLIVPVRMGIARPTAPFTLASTSIDAMQGSEELFSVEPLPPRPSSAAQAPRSMQWAVRN
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Known secondary structure (DSSP) TT



B




BSS















TT

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TQNASSYLTSASSLARAYSIVIRQISDLMGLIPKYNHLVYSQIPAAVKLTYQDAVNLQNYVEEKLIPTWN
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Known secondary structure (DSSP)




BSTTTTTT
S





 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence WMVSIMDSTEAQLRYGSALASAGDPGHPNHPLHASQGMMSARGDFLNYALSLMRSHNDEHSDVLPVLDVC
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Known secondary structure (DSSP) S
TTSTTS

TTT

SSS




SG
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SLKHVAYVFQALIYWIKAMNQQTTLETGQNHPFFRRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQP
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Known secondary structure (DSSP) GG


STTSTTTS

TTTS
TT




TTTS


GGG

T
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NARKEDLFGRPNCLEVLPTKMSYAANLKNVMNMQNRQKKESEGPPLTSFRPQCSFMGMVISHDMLLGRWR
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Known secondary structure (DSSP) T

S



TTTS




SS


SSS
GGG





SSSS


T
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLN
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Known secondary structure (DSSP) STTTTTTSTT
SGGGG

TT




SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence NHFGRRCATTPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLECIQNADDNAPLFYQPGK
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Known secondary structure (DSSP) TS
TTS



S
TTB


S
SS



GGGGG






S

TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLR
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Known secondary structure (DSSP)
S
B

TT

TT





B
T




 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence QLILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQP
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Known secondary structure (DSSP) TTSTTTT
BS

GGGTSSSSTTGGG
B

TTTTTTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence LHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEK
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Known secondary structure (DSSP) TTS
GGGGTT

T
BSS



S


 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence MSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLA
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Known secondary structure (DSSP) S
S
SSB
SSGGG
SS

S

SSS

GGGT

SS
 .........
Sequence IKTKNFGFV
Predicted secondary structure






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Known secondary structure (DSSP)

S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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