Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8olxB_

Fold library idPDB HeaderMoleculeTitle
c8olxB_3.10PDB header: dna binding proteinChain: B: PDB Molecule: dna mismatch repair protein msh3;


Added to library: Sat May 27 09:15:37 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVR
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
TTS

TTS
SS
T




B
SSSB
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPTSYLLCISENKENVRDKKK
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) TT

SS
SS
SSS



SS


SSTT



SS

SS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDDRI
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) T
TTTT
TT


SS

SS
TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence RVERMDNIYFEYSHAFQAVTEFYAISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEF
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
GGGTS


S
TTT
GGGGSSGGG
S

TTTB
 .........290.........300.........310.........320.........330.........340.........350
Sequence MTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSE
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)

TTSSS
TTTS
STTS


SSSS
B



 .........360.........370.........380.........390.........400.........410.........420
Sequence SSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILE
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
TTTT


TT


T


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence IPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQY
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TGGGGGGTTTB
T
SSS
BS

SS
T
TT


 .........500.........510.........520.........530.........540.........550.........560
Sequence VTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKF
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) TTSSS
SSS
TTS



SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence SEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLQYVPNNTDLSEDS
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) GGGTTSSS
B



BSS







TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMSTFMEELTDTAEIIRKATS
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)

S

ST

BSSSB

S




T
 .........710.........720.........730.........740.........750.........760.........770
Sequence QSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLYQITR
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) T
STTTTS
TS


S
GGGGT
TTTS



 .........780.........790.........800.........810.........820.........830......
Sequence GIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEEFN
Predicted secondary structure











SS confidence

































































Known secondary structure (DSSP) S


SS
TT



SSTTTTTTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D