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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8ipqB_

Fold library idPDB HeaderMoleculeTitle
c8ipqB_3.50PDB header: transport proteinChain: B: PDB Molecule: transmembrane atp-binding protein abc transporter cydd;


Added to library: Sat Jun 17 15:05:46 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SYFQSNVVIAGCTIASAVVLAHIVAGIITNPATDWAPGLVALAVLWSVRVVAQWFQGRLSQRGATAVIGE
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Known secondary structure (DSSP)




T
 .........80.........90.........100.........110.........120.........130.........140
Sequence LSRQVLSSVTTSSPRRLAADRDSAAAVVTRGLDGLRPYFTGYLPAVVLAGILTPAALVVMAAYDWQAAAI
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Known secondary structure (DSSP) TSS
TTTTSGGGT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VVIALPLIPIFMVLIGLLTAERSAAALTAMTTLQGRMLDLIAGIPTLRAVGRAGGSVQRIAELSASHRRS
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Known secondary structure (DSSP) GGGTTTTTSS
SSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TMATLRISFLSALVLELLATLGVALVAVSVGLRLVFGDMTLAAGLTALLLAPEVFWPLRRVGAAFHAAQD
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Known secondary structure (DSSP) TTTS
S
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GKTAAEQALRLCAEPHPPTGHEVVPAGAPVIEVPALKAVMEPGRVTVLTGPNGVGKSTLLQAILGLQESP
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Known secondary structure (DSSP) TTTSS






B


SS


TTTT
TTS

STTSSTTSS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence CGPILVAGVEVGALDRSAWWGRLAWMPHRPVLVPGTVRENLELLGPVPGLDEVCRSVGFDEVLGELPDGS
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Known secondary structure (DSSP) SS

TTGGGB
TT
SS



STTSSS

TTT
STTST
 .........430.........440.........450.........460.........470.........480.........490
Sequence ETPLGRGGVGLSLGQRQRLGLVRALGAPADVLLLDEPTAHLDGALEDRVLAAIVARARAGATVVMVGHRA
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Known secondary structure (DSSP) T

TTSTTS
SS

SSSTTTT

TT




S
 .........500.....
Sequence PVLAAADHVVTMESS
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Known secondary structure (DSSP) TTSS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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