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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8if4A_

Fold library idPDB HeaderMoleculeTitle
c8if4A_3.20PDB header: membrane proteinChain: A: PDB Molecule: voltage-dependent calcium channel subunit alpha-2/delta-1;


Added to library: Sat Apr 8 13:38:08 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FPSAVTIKSWVDKMQEDLVTLAKTASGVNQLVDIYEKYQDLYTVEPNNARQLVEIAARDIEKLLSNRSKA
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Known secondary structure (DSSP)


T
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence LVRLALEAEKVQAAHQWREDFASNEVVYYNAKDDLDPIKPVFIEDANFGRQISYQHAAVHIPTDIYEGST
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Known secondary structure (DSSP) T






SSS



TT












TTSSS

BTTS


SSS
SSST
 .........150.........160.........170.........180.........190.........200.........210
Sequence IVLNELNWTSALDEVFKKNREEDPSLLWQVFGSATGLARYYPASPWVDIDLYDVRRRPWYIQGAASPKDM
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Known secondary structure (DSSP) TTTTT
TT

TTB
SSB









TTSSSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNN
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Known secondary structure (DSSP)

GGG
S

TTSSSSSSS

S


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence ITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFNKYNKDKKVRVFTFSVGQHNY
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S


T
TTS


SS
B


S



SS


SS


 .........360.........370.........380.........390.........400.........410.........420
Sequence DRGPIQWMACENKGYYYEIPSIGAIRINTQEYLDVLGRPMVLAGDKAKQVQWTNVYLDALELGLVITGTL
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Known secondary structure (DSSP)

TT


STTSTT
SSS








TTS



 .........430.........440.........450.........460.........470.........480.........490
Sequence PVFNITGQFENKTNLKNQLILGVMGVDVSLEDIKRLTPRFTLCPNGYYFAIDPNGYVLLHPNLQPKNEPV
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Known secondary structure (DSSP)




TTT


SSGGGS

T

GGGS
TT

TTSB
TT





B
 .........500.........510.........520.........530.........540.........550.........560
Sequence TLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVLPTYS
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Known secondary structure (DSSP)

BS


TTSTTS



B
SSTTBB


SSSS
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence FYYIKAKLDSETLKPDNFEESGYTFIAPRDYCNDLKISDNNTEFLLNFNEFIDRTPNNPSCNADLINRVL
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Known secondary structure (DSSP) S


TTTT
GGG




S
S
SSS


SSS

TT
TTS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence LDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFT
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Known secondary structure (DSSP) TTTT



SS
TTS

SSSGGGTT

S
S
TTT

SSB
 .........710.........720.........730.........740.........750.........760.........770
Sequence APYFNKSGPGAYESGIMVSKAVEIYIQGKLLKPAVVGIKIDVNSWIENFTKDCKRNSDVMDCVILDDGGF
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Known secondary structure (DSSP)


SS
SS

STTT


SSS




TT




SS
STT
B
 .........780.........790.........800.........810.........820.........830.........840
Sequence LLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCESCITEQTQYFFDNDSKSFSGVLD
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Known secondary structure (DSSP) SSSSTTTTTTSBGGGT
TTSS














S

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence CGNCSRIFHGEKLMNTNLIFIMVESKGTCPCDTRLLIQAEQTSDGPNPCDMVKQPRYRKGPDVCFDNNVL
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Known secondary structure (DSSP) SSS

TTBS
TTSS


S




S


S
SSS






S





TT
 .....
Sequence EDYTD
Predicted secondary structure




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Known secondary structure (DSSP)





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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