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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8i03D_

Fold library idPDB HeaderMoleculeTitle
c8i03D_3.20PDB header: dna binding proteinChain: D: PDB Molecule: histone deacetylase clr6;


Added to library: Sat May 6 08:52:48 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRCHTDEYIEFLWRV
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Known secondary structure (DSSP)


GGGGG



SS
S

TTT
TTT





TTTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence TPDTMEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGNAEIAINWAGGLHHAKKREASG
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Known secondary structure (DSSP)
TTSTTTTTTTTGGGT
SSSS


TTTTS
STT






SSS
BT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTG
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Known secondary structure (DSSP) TBSS
TTT
S


SS

TTT
SS
SS
SS



TT


SGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence KNYAVNVPLRDGIDDESYESVFKPVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVK
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Known secondary structure (DSSP) TT

TT

T

S


TTBTT
SS



B
 .........290.........300.........310.........320.........330.........340.........350
Sequence SFNLPMICVGGGGYTVRNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQYL
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Known secondary structure (DSSP) TT







ST



SB



TTGGGGTTT
BS











 .........360...
Sequence DSITSEIIENLRN
Predicted secondary structure

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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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