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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8hpoG_

Fold library idPDB HeaderMoleculeTitle
c8hpoG_2.60PDB header: dna binding proteinChain: G: PDB Molecule: histone deacetylase rpd3;


Added to library: Sat May 6 08:50:16 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VYEATPFDPITVKPSDKRRVAYFYDADVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATK
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TT





TTGGG



SS
S

STTGGGT





 .........80.........90.........100.........110.........120.........130.........140
Sequence QEMCQFHTDEYIDFLSRVTPDNLEMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLNRGKCDV
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Known secondary structure (DSSP) TTTS


TTS
GGGTTS
BTTTB


TTTTS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence AVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHKY
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Known secondary structure (DSSP) TT


TT
BTTB
BTTB
S

S

SSS

TTT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GEFFPGTGELRDIGVGAGKNYAVNVPLRDGIDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGDSLSGDRL
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Known secondary structure (DSSP) SS
TT



TT


SGGGTT

TT

T

S

STTBTT
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GCFNLSMEGHANCVNYVKSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLDKDLPYNEYYEYYGPDY
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Known secondary structure (DSSP)



B
TT
S





STT



SB



SS
GGGTTT
 .........360.........370.........380.....
Sequence KLSVRPSNMFNVNTPEYLDKVMTNIFANLENTKYA
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Known secondary structure (DSSP) BS











TTT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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