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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8hmfE_

Fold library idPDB HeaderMoleculeTitle
c8hmfE_4.60PDB header: protein transportChain: E: PDB Molecule: wd40 repeat protein;


Added to library: Sat Jun 17 14:29:50 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MASSKKVFEFKDDLNGSGKVLFSWSQDCSYIAVCGQSKVVYVLDKRGRKLKETVLKSKNKVIGLEWDKDQ
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Known secondary structure (DSSP)




TTTS
SS


TTSS

SS

TTS

SS
S

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFLAILQENSTCFLLWNVFQNSFEQQDLEEKSKGSFIKWSKTHPVLVIGTEKGILYFYNKKTQKKIPTMG
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Known secondary structure (DSSP) STT
STTTT
GGG


SSSSTTS
TTTT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KHSKKITTGDWNDEGLLITGSEEKVLTVSSHNSDSKGESITVQHEPSNLQWARQKTDDRDSSQRTITAIL
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Known secondary structure (DSSP) S
SS


TT

TTT
TTS
BSS


SS




SSTT

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence SNKSILMYDLNTKKQPLELVYEPKYGKIVDYQLFGDGYIVTGFTEGYVAHVSSHLYELRDEIQSKRIFQS
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Known secondary structure (DSSP) TTT
SSS






TTT
STTTTTS
SSS
S

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence SLDALCTNDIIYKLAVAGENQIHIYNLGTWEEVKSQRIELPKAAGNVTKMQWANNGQLLVVATANGHLYG
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Known secondary structure (DSSP)


TTTTTT
SSS



GGG
S
SSSSTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence YLTSIPFLTSTYGSIVSVLSSFTEVSIVDTSRINQIQNVSSINLETEPGFLSLGLYHLAAGINNNVWYYL
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Known secondary structure (DSSP)







TT

STT

SSSS




SS

S
SS
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence WLDQKRNGIIKGGEMIQKRDYLGSVKDIRLNEFWAAVLTDGKCILHTIQPNNNVKDQKFPQIETDKAISG
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Known secondary structure (DSSP) SSSSS

SS









SS




SS
TT
SS

S









TT



S
 .........500.........510.........520.........530.........540.........550.........560
Sequence IGLTNDFLIMLDSSGKIRYYHLEDQQFVVEYKPADCQLVKIYPNFSGTRVVCFDNKGSAYLFEPAQEQFY
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Known secondary structure (DSSP)
SS
TTS
TTT

S

SS

SSSS
GGGTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence PLEHFPQRAEKVLWDQKDPNLFAVLQNDTLITFIINKNNINGTLIQPVKELLAIEDIKNPGPPVQTILDR
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Known secondary structure (DSSP)

S

SS

BSS
TT
SSSSSTT


B


SSS






B



T
 .........640.........650.........660.........670.........680.........690.........700
Sequence GVKPLTLSNGLLKCFTPSGSINGQNLTSHSYLGSYKGRDDTDQGHYRFFLQNLQLHKYNNCLIAAQFLHN
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Known secondary structure (DSSP) T




TT
TTT



TTT


SS

ST
S

 .........710.........720.........730.........740.........750.........760.........770
Sequence AVLYKELGRKALEFVDLDVALKSYQLAGSLSMVMTIQSFQHINEKNIIYGNIAMILGQYDLAQELFLKSS
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Known secondary structure (DSSP) TT
T




S
STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence QPILALEMRSDIQDYLTALNLAKSIAPQEEPFICRRLAFQIENQGNNQEARKLYERAVLNKDDRPSDRSK
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Known secondary structure (DSSP)
T

GGGS



SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence IDNHNQLCFAGISRTSIKLGDIQRGVTIAKELIDNNIVIEIAVVCENMKQYLEAAELYQKSGMLEKAASL
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Known secondary structure (DSSP) TT



T
STT

 .........920.........930.........940.........950.........960.........970.........980
Sequence YIESKDFKKAAPLISMIKSPNLLKQYAKAKESEGAYNEAEQTYEQAESWEDVVRLNLDKLDNLRKAIAVL
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Known secondary structure (DSSP) TT



T
SS

TT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RTKCDTSTVCLMVANVCEKQGNYGELVEFLLKAGKKEEAFQKAQQYNVMDAYSDNMKDFTLEERLRIAQY
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Known secondary structure (DSSP) TTTT

TTS



TTT
TTT

TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence YENQGIWVKAAKHFEQAKNPTKSLKLYLKAGDQYIDDMIDLVCRNKQQESLQQTLLDYLLEGEKPKDPIY
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Known secondary structure (DSSP) TTT

STTT
TS
STT

S

SSSS


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LLKLYDKLGNIQSLVKIAITIASDEHDQGNYKIAHERLFETYQKVKEHNVAIPFDLEQKLMIIHSYILAR
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Known secondary structure (DSSP) T

T
TT



 .....
Sequence KYLAY
Predicted secondary structure


SS confidence




Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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