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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8hmcB_

Fold library idPDB HeaderMoleculeTitle
c8hmcB_3.60PDB header: protein transportChain: B: PDB Molecule: wd40 repeat protein;


Added to library: Sat Jun 17 14:10:36 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MFVFLSKKIGMPNNAKIEAVCWNKEQGWIAAGGEKGILKVLKIEDQRQKDGSNPTTTGQLLVNNTLEYHT
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Known secondary structure (DSSP)


SSS





SSS


SSS




S

TTS

TT




SS




S
 .........80.........90.........100.........110.........120.........130.........140
Sequence SNVYLVTWNDRYRKLTSVEENGIIVVWAYFRELQLWKEEMINDRKKSVVRDLKWSPDGQKVCIAYEDGAV
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Known secondary structure (DSSP) S

SSSS
TT
BTTTT

B
SS


TTS
SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence IVGSVEGSPLWRKEFPHKLALIEWSPDSKMMIFGTPEGEVRVYDSQGMEMQRLKIHCLQKLIDPSKSFSP
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Known secondary structure (DSSP) SSS


SS



TTSS
SS

TTS




S

SSS
SS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DLPLAAIDWFPQAKMYTDDTPPGLCIAYQCGRVQLMKNEKDDEPVLIDTMMKIFTVKWNPSGSMFAISGT
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Known secondary structure (DSSP) S


SS

SS
SSS


SSSSSTT
SS

SS
SSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence QDENGELKGVVQFYSNAGHHLKTLRVPGSDRVTGVSWEGSGLRIAMAVNQAIFFANIKPDHKWAYMSDGT
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Known secondary structure (DSSP)
TTSS
SS




SSSS




SSSSTT




SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LAFAYQKIDRVEYTIIFWDTINNKKNLKFVKNLCCLRASGDLCCIVTELIGYDLWQIDLCNSIGSPIDSK
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Known secondary structure (DSSP)
TTSS
TTT

S

S
SS
TTTT
SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence QINIYPNAVTMTKTHIIVCSQDHVYAWQYKNQVERLTTFEQQTGLRRVGREQAWFIDKENDSNNQYDKDT
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Known secondary structure (DSSP)
S

S
SS

SS

B
SSS
BTTS

S
SS

SS
SSS

S





TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence YDVEPQSEDVICTVAANENFLLVARISGTINVYTFPHISLENKLHIQTRPSQMSLNKDATRLAIIDHNGN
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Known secondary structure (DSSP) S





SS




SS
TTSSSS


SS
BSS

TTS
BTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LNILKITPQGDELLPFEKKECWFVKYSDDIPESFVFMERSRMYIVNDQTPEEPIITEGYICQYKDFQVKI
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Known secondary structure (DSSP)

TT






S


SSSSS

SSBTTB





STT
 .........640.........650.........660.........670.........680.........690.........700
Sequence VYLDDIMKSPDGVLRKEELTLEIEANILKDIKDQLYKKSMQEMFIVIKQHDNDCLWRVYAKKALEDNDFD
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Known secondary structure (DSSP)
T
SSS


TTTS

S


TT
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence SAENAFVQCKDYASLKFLQRVRELDDRERQRAEIQCYFNKVEEAEEIYNKIERRDLSIQMRMKLGDWAQV
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Known secondary structure (DSSP) T
S

SST


T
 .........780.........790.........800.........810.........820.........830.........840
Sequence VDQIREGTGQDVELQKARLELGNYYAENFQWDKAAKQYALAKYNPGLIEAYTRIQDYEGLEKLIAEIPER
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Known secondary structure (DSSP) TTTT

TT
T
T

S
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence NELLQDMGDRFQQAGLCDAAVKCYEKFGDIKQAIDCCVLLNHWNLAVELAEQYNFVQIEGLLVQYANQLL
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Known secondary structure (DSSP)
T
T
STT
T

 .........920.........930.........940.........950.........960.........970.........980
Sequence EKRRKLEAAELYRKAKRNTEAAKILSQIADDLTERDANPLNIKKMYVMAALEVDLYKKRMLDATMTGQAT
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Known secondary structure (DSSP) TT
TT
TS


SS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence STAKTLNSLITSTINTSSADKILNNPWRGAEAWHFFILAQRQLYNGQFKYALKSALRLGEYELEIDQKKI
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Known secondary structure (DSSP) T


TTTS

SSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence YSLIAIAAYYNKSFRECSRAFVKLQNLENITEDEKERYEAIAVSIFTKHPPLDSPCEYTPCVGKNCSQQV
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Known secondary structure (DSSP) TT
T
SS


S











SSSS




 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence SEYDIHCRACGSNFSPCVASGRPIFQKEFYQCKNCRHKMIESEVSRLKLYNCALCHSPIDFKRFTESNNN
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Known secondary structure (DSSP)
SS

S
TTT






TTTS



SS

B

TTT


B
T
SS
TTT


S
 .....
Sequence NNNNI
Predicted secondary structure

SS confidence




Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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