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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8hmcA_

Fold library idPDB HeaderMoleculeTitle
c8hmcA_3.60PDB header: protein transportChain: A: PDB Molecule: intraflagellar transport protein 122 homolog;


Added to library: Sat Jun 17 14:05:12 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKCSELWTEIIPKNDPNSNITNQVWSCSFNNDGSILLACVGDAILVYDSFTGNLVNKAIRGGQKEQINCI
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TTSS

S
B



B
SSSS
TT
SSS

BSS

SSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KFSKDGKRFATASNDKTVWVWSFDVNKNPKLAPEVKYSHTDKVLCLAFNPLTHQIFSGGAQDYALWTPDQ
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SSS
TTT
SSSSSS
SS

TTT

TT
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QSIEKSKFKDKIITCAWSWDGLYLGFGTMGGIIGIRNRALEQLAEIQRSFPIWCMDWTPITPDYQNSVLV
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SS

TTSS
TTS
TT




SS




TTT



 .........220.........230.........240.........250.........260.........270.........280
Sequence VGVWEQSIAHYNIQGQQLGSDKKLTYDPIDINFSTQGEFLLVSGTNNKCTLYTREGGFLIDVATKNDWVW
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Known secondary structure (DSSP) TTT
SSS
B
S


SS

GGG
GGGSS


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NNKLKPVIKEAGSVAVQDQLHVALTTNDGEISMFKIQQLTVHALEGDKYAYRDNLTDIVVQSMSSNQRIR
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TT






SSS



SSS

SSS
TTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence LKCKELVKNISIYKDKLAAHLTERILIYGTSSEDSQMKYKLHKRIVKKVEAHILEIVSNHLIACVKNKVQ
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Known secondary structure (DSSP)
SS
TTTT
SSSSS







STTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LYQLSGDLEKEWVFDSRVNCIKIIGGMPNKEGAYVGLKNGQIFKIFVDNSFPIPILNHNISIKNIDASQK
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Known secondary structure (DSSP)
SSS

SS



STT


SS


TTT
S


SS

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence RKRLAVVDKNSNLTVYDLSNKEQVFQEMNIVSCAFNNNFDDLLAFSSTDTTFIRCSNHPPLSQKISGQVV
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Known secondary structure (DSSP) S
TTS
SSS

SS


SSSS


SS

TT






S
 .........570.........580.........590.........600.........610.........620.........630
Sequence GFKANKLFVLNDNVMSTIDVSMTQTMIKYLERKEFQSAYEISLLGVTDQDFLYLGNEALIATQFAIARKC
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Known secondary structure (DSSP) TTTT



TT
TTT

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence YTRIKKLDFIYLLEKAEKDFKKNTFVEGFYQGEIYALQTKFYEAENALTKSNLASQAKEMWIILKEFDKA
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Known secondary structure (DSSP) TT
SS


TT
TT
TTT
 .........710..
Sequence MRITDTGASPIN
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Known secondary structure (DSSP)






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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