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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8hilA_

Fold library idPDB HeaderMoleculeTitle
c8hilA_3.57PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase v largest subunit;


Added to library: Sat Mar 25 11:52:46 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SGFSSRSVITGDAFRNVNEVGIPMEIAHRITFEERVSVHNIGYLQELVDNKMCLSYTQGSTTYSLRDGSK
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Known secondary structure (DSSP)






B
SSS
TTTT



SSTSSSB




TT




S
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence GHTVLKPGQIVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCGPLSADFDGDCVHLFY
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Known secondary structure (DSSP)





TT



TT

S
S

S


SSSS
GGGGTTTT

SSS
B

 .........150.........160.........170.........180.........190.........200.........210
Sequence PQSLTAKAEVLELFSVDKQLRSSHTGQLILQLGLDSLLSLRVMMEQVFLDKASAQQLAMYGSRSLPSPAV
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Known secondary structure (DSSP)

SS
TTTT
B
TTTSSBS



S

TTTSSS




SB
 .........220.........230.........240.........250.........260.........270.........280
Sequence VKSSKSGPAWTFFQILQLAFPERLSCRGDGFIVGGSDLLSFDFGVDALASIINGIVTGIMVEKGPKEALA
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Known secondary structure (DSSP)


SSSS
BGGG

SS

SS
SS




STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FFDSLQPLLMEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREISPMVSRLRLSYEDELQLENSIQKVKEV
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Known secondary structure (DSSP) TTTTTT







TTTTTTTTT

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence AANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKLYTKTLVEDMAQFYKKKYVSTSSSGDFG
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Known secondary structure (DSSP) TTSSTTS
SS
STTTTTTT




S
STTS
GGGTTTTSS

SS
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence IVKGCFFHGLDPYEEMAHSVAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSIVQFK
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Known secondary structure (DSSP)


TTT


S

TTSSS
TTS
TTT

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence YELSSDNENQGLFEAGDPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVIL
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Known secondary structure (DSSP)
STT

SS

SS

TT

S


TSS

SS



STTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YLNECRCGKKYCQENSAYTVRNKLKKVSLKDTAVEFLVEYRKQQAISEIFGMDICLHGHIHLNKTLLEGW
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Known secondary structure (DSSP)




SSSSS


BSTTTB


B

SSS
TTT


TT






B

B
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence NISMQDILQRCEDAINSLVQKKKKKAEDFKKMNLSVSECCSFRGPGSSKDSDMPCLMFSSYNATDPDLER
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Known secondary structure (DSSP) T

SSSSS
SSSTT






S


S

TTT




SS






TTSSS
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence TLDVLCNTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSLHASRRGEWVLDVTVEKSDVKQSGDAWR
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Known secondary structure (DSSP) GGGSSST
B
SS
TT



STTSS

S

SS
S



TT

SSTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence VVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRKVSKGVLKEHIILVANNMTCSG
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Known secondary structure (DSSP) TT
GGGTTSS
TTS

BSST
S


TSSS
 .........850.........860
Sequence DMLGFNSGGYKASQFELLWN
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Known secondary structure (DSSP) S


SST

TT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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