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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8h7gC_

Fold library idPDB HeaderMoleculeTitle
c8h7gC_3.70PDB header: transcriptionChain: C: PDB Molecule: transformation/transcription domain-associated protein;


Added to library: Sat Dec 17 09:44:07 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKYLQFVAALTDVNTPKLKMMQEVSENFENVTSSPQYSTFLEHIIPRFLTFLQDGEVQFLQEKPAQQLRK
Predicted secondary structure


















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Known secondary structure (DSSP)

STTTGGG


T
SSSTTT


S
SSS
SSSSSS



SSS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVLEIIHRIPTNEHLRPHTKNVLSVMFRNVLICLRIIIELHKQFRPPITQEIHHFLDFVKQIYKELPKVV
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Known secondary structure (DSSP) TT



S

TTGGGSS




TSSS




SSTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NRYFKVLAELPIIVVLMYQLNIHNVVAEFVPLIMNTIAYADFIAAQIKTLSFLAYIIRIYSQQMVKGMLQ
Predicted secondary structure


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Known secondary structure (DSSP) T


SSS
ST

SSTTS






STS







S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LLSNCPAETAHLRKELLIAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHH
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Known secondary structure (DSSP) T

TT
SSST
SSSSSSSGGGTS
S


SS
SS
SSSTTTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VRQHLPLSDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQESGNGRDVLMRMLEVFVLK
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Known secondary structure (DSSP)
SS

TT
TTS
TS



 .........360.........370.........380.........390.........400.........410.........420
Sequence FHTIARYQLSAIFQVTDCRSLVKTLVCGVKTITWGITSNKQLQPKETQIYIKLVKYAMQALDIYQVQMKE
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Known secondary structure (DSSP) S








TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence EKEVLEHFAGVFTMMNPLTFKEIFQTTVPYMVERISKNYALQIVANSFLANPTTSALFATILVEYLLDRL
Predicted secondary structure







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Known secondary structure (DSSP) TTTTTS
T
TTGGGSS
SSTG
 .........500.........510.........520.........530.........540.........550.........560
Sequence PEMGSNVELSNLYLKLFKLVFGSVSLFAAENEQMLKPHLHKIVNSSMELAQTAKEPYNYFLLLRALFRSI
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Known secondary structure (DSSP) GGTTTSS

SSSSTTSSS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence GGGSHDLLYQEFLPLLPNLLQGLNMLQSGLHKQHMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNG
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Known secondary structure (DSSP) SSSS
STTGGGTTS
S
SSS
S

STT
GGGGGGGSTSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence SQTLVSQGLRTLELCVDNLQPDFLYDHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGGSNRKMLK
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Known secondary structure (DSSP)
TS
GGGTTSSS
TTTSSSTTSS

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence ESQKLHYVVTEVQGPSITVEFSDCKASLQLPMEKAIETALDCLKSANTEPYYRRQAWEVIKCFLVAMMSL
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Known secondary structure (DSSP) S






S






SSTT

T
SS

S

 .........780.........790.........800.........810.........820.........830.........840
Sequence EDNKHALYQLLAHPNFTEKTIPNVIISHRYKAQDTPARKTFEQALTGAFMSAVIKDLRPSALPFVASLIR
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Known secondary structure (DSSP)


SST
SSSSSS







STT




TTSTTTSTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence HYTMVAVAQQCGPFLLPCYQVGSQPSTAMFHSEENGSKGMDPLVLIDAIAICMAYEEKELCKIGEVALAV
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Known secondary structure (DSSP) TTSSSTT

GGGSSS



GGGS

SSS

SS

TTTSSSTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence IFDVASIILGSKERACQLPLFSYIVERLCACCYEQAWYAKLGGVVSIKFLMERLPLTWVLQNQQTFLKAL
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Known secondary structure (DSSP) SSS
TSTGGGSSS
SS
T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LFVMMDLTGEVSNGAVAMAKTTLEQLLMRCATPLRAEEIVAAQEKSFHHVTHDLVREVTSPNSTVRKQAM
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Known secondary structure (DSSP)

SS
S
T




TTTTT
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence HSLQVLAQVTGKSVTVIMEPHKEVLQDMVPPKKHLLRHQPANAQIGLMEGNTFCTTLQPRLFTMDLNVVE
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Known secondary structure (DSSP) TTS
STTTTSTTTTTSS

S

SSSS
T
SSS

S


TTTTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence HKVFYTELLNLCEAEDSALTKLPCYKSLPSLVPLRIAALNALAACNYLPQSREKIIAALFKALNSTNSEL
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Known secondary structure (DSSP) TTSS

SSSTT

STTSS
S





TT

T
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QEAGEACMRKFLEGATIEVDQIHTHMRPLLMMLGDYRSLTLNVVNRLTSVTRLFPNSFNDKFCDQMMQHL
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Known secondary structure (DSSP) TTSS


STTS
STT

TTSSS
S

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence RKWMEVVVITHKEEMKICSAIINLFHLIPAAPQTLVKPLLEVVMKTERAMLIEAGSPFREPLIKFLTRHP
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Known secondary structure (DSSP)


SSS

GGGT

SS
TTTTT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SQTVELFMMEATLNDPQWSRMFMSFLKHKDARPLRDVLAANPNRFITLLLRLDLQFQAIKIISIIVKNDD
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Known secondary structure (DSSP) T
TST
SS
T


T

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence SWLASQHSLVSQLRRVWVSENFQERNWKEPKLLAYCLLNYCKRNYGDIELLFQLLRAFTGRFLCNMTFLK
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Known secondary structure (DSSP) S


S

GGGT



STTSS

SSSTTTTTSSSSSS

SS
SSSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence EYMEEEIPQKRALFFRFVDFNDPNFGDELKAKVLQHILNPAFLYSNPESITSVFITKVLDPEKQADMLDS
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Known secondary structure (DSSP)



STTTTS

SS




TTTTSSTT




ST
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LRIYLLQYATLLVEHAKLRRLMTFAWPCLLSKACVDPACKYSGHLLLAHIIAKFAIHKKIVLQVFHSLLK
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Known secondary structure (DSSP)


T
TTSSSSS


SSSS


SSTTS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence AHAMEARAIVRQAMAILTPAVPARMEDGHQMLTHWTRKIIVEELVHILHLIVQHFHHLVQHMVSAMQRLG
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Known secondary structure (DSSP) S

TTSTTTTTTSTT

TT


T



GGGT


ST
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FEQRRLAVDLSEVVIKWELQRDKQHTDTVVNFLIRVACQVLSRRCVNLLKTASELKLQWFDKLLMTVNYG
Predicted secondary structure







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Known secondary structure (DSSP)



SS


STT

T


SSTTTTT

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence NICTGLEVLSFLLTVLQSPAILSSFKPLQRGIAACMTCGNTKVLRAVHSLLSRLMSIFPYEELECLYAAV
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Known secondary structure (DSSP) TTTSTTTTT

TTTTSSSTTSS

TTT



 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence GKVIYEGLTPSQLFGTLMILKSACSNNPSYIDRLISVFMRSLQKMVREHLNPATSGTSELVMLSLELVKT
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Known secondary structure (DSSP) T




S


SSSS


S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence RLAVMSMEMRKNFIQAILTSLIEKSPDAKILRAVVKIVEEWVKNPTLREKSILLVKMMTYIEKRFPEDLE
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Known secondary structure (DSSP) S


S

S
TS


S



SSSSSTTT
TT
SS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LNAQFLDLVNYVYRDLTAKLEPAFLSGLRCAQPLIRAKFFEVFDNSMKRRVYERLLYVTCSQNWEAMGNH
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Known secondary structure (DSSP)





TTTSS
TTS
S
TTTTS


S
SSS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence FWIKQCIELLLAVCEKSTPIGTSCQGAMLPSITNVINLANQLHMLTNRHDKFLDTLREVKTGALLSAFVQ
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Known secondary structure (DSSP)
TTTS
SSSB
B
S
TTS



STT

S

BS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence LCHISTTLAEKTWVQLFPRLWKILSDRQQHALAGEISPFLCSGSHQVQRDCQPSALNCFVEAMSQCVPPI
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Known secondary structure (DSSP)
S
TTTT
TTSSGGGS
SS
TTTTS
SS

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence PIRPCVLKYLGKTHNLWFRSTLMLEHQAFEKGLSLQIKPKQTTEFYEQESITPPQQEILDSLAELYSLLQ
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Known secondary structure (DSSP)


TSS
TTSSSSS




S
TTT

S


SS
SS
TT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence EEDMWAGLWQKRCKYSETATAIAYEQHGFFEQAQESYEKAMDKAKKEHERSNASPAIFPEYQLWEDHWIR
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Known secondary structure (DSSP)


STTTS
S


TT
S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence CSKELNQWEALTEYGQSKGHINPYLVLECAWRVSNWTAMKEALVQVEVSCPKEMAWKVNMYRGYLAICHP
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Known secondary structure (DSSP) TTT
TTSSS


GGGSS

TTT

SS
S
S
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence EEQQLSFIERLVEMASSLAIREWRRLPHVVSHVHTPLLQAAQQIIELQEAAQINAGLQPTNLGRNNSLHD
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Known secondary structure (DSSP) S




STTS
SS

GGGT
GGG
SSGGGT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence MKTVVKTWRNRLPIVSDDLSHWSSIFMWRQHHYQGKPTWSGMPSSNNAMLGVHASASAIIQYGKIARKQG
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Known secondary structure (DSSP)



TTS
TT





TT
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence LVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLNECMQGLEVIESTNLKYFTKEMTAEFYALKGMF
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Known secondary structure (DSSP)
SGGGGG
S





STTTS

S


STTTT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LAQINKSEEANKAFSAAVQMHDVLVKAWAMWGDYLENIFVKERQLHLGVSAITCYLHACRHQNESKSRKY
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Known secondary structure (DSSP) TSS

SSTTTS

TTSS

GGGTTT

SSS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence LAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQLLTCLVGSEGKLLLNLISQVGRVYPQAVYFP
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Known secondary structure (DSSP) T


SS

TTS
GGGGTTSSTT
GGG
TTTTT
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence IRTLYLTLKIEQRERATAPMWRCSRIMHMQRELHPTLLSSLEGIVDQMVWFRENWHEEVLRQLQQGLAKC
Predicted secondary structure






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Known secondary structure (DSSP)


SSSTTGGG


 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence YSVAFEKSGAVSDAKITPHTLNFVKKLVSTFGKLKGQFTTDFDFSVPGSMKLHNLISKLKKWIKILEAKT
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Known secondary structure (DSSP) S
SS
S







SSST
SSS
SS
SG
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence KQLPKFFLIEEKCRFLSNFSAQTAEVEIPGEFLMPKPTHYYIKIARFMPRVEIVQKHNTAARRLYIRGHN
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Known secondary structure (DSSP) GG





SSSS
STTTS

TTT


B
TTTTSS

SS



B




SS



TT
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence GKIYPYLVMNDACLTESRREERVLQLLRLLNPCLEKRKETTKRHLFFTVPRVVAVSPQMRLVEDNPSSLS
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Known secondary structure (DSSP) S




GGGGSGGGGSSSSTT







SSS


SS
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence LVEIYKQRCAKKGIEHDNPISRYYDRLATVQARGTQASHQVLRDILKEVQSNMVPRSMLKEWALHTFPNA
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Known secondary structure (DSSP) TTS
TTTTT



TS
TT


 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence TDYWTFRKMFTIQLALIGFAEFVLHLNRLNPEMLQIAQDTGKLNVAYFRFDINDATGDLDANRPVPFRLT
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Known secondary structure (DSSP) TTB



TTTSSS

S


B


SSS






SSSS


 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence PNISEFLTTIGVSGPLTASMIAVARCFAQPNFKVDGILKTVLRDEIIAWHKKTQDSQQLVSLVQKAVTAI
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Known secondary structure (DSSP)
TTTTT
TTS





 .........3230.........3240.........3250.........3260.
Sequence MTRLHNLAQFEGGESKVNTLVAAANSLDNLCRMDPAWHPWL
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Known secondary structure (DSSP) TTT

SSS

SS
TTS
GGG
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
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