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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8h3mB_

Fold library idPDB HeaderMoleculeTitle
c8h3mB_2.48PDB header: viral proteinChain: B: PDB Molecule: spike glycoprotein;


Added to library: Sat May 13 09:09:45 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHNPVLPFNDGVYFARGWIFGTSLLIVNVVIK
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Known secondary structure (DSSP)

TT


B

SS



S



TT








SS
B









 .........80.........90.........100.........110.........120.........130.........140
Sequence VEYVSQNLREFVFKNFKIYSKHLPQGFSALEPLVDLPIGINITRFQTAYYVGYLQPRTFLLKYNENGTIT
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S


BB







S






B



TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence DAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPKSTNLVKNKCVNFNFNGLKGTGVLTE
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Known secondary structure (DSSP) TTS
TSSS

S





B











SSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPWRV
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Known secondary structure (DSSP)





TT


B

TTS



TTT





S
TTT
S

T

SSS



S
 .........290.........300.........310.........320.........330.........340.........350
Sequence YSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQSIIAYTMSLGAENSVAYSNNSIAIPTNF
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Known secondary structure (DSSP) TT
SS
TTS

S




STT















SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQI
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Known secondary structure (DSSP)




TT
GGG
S


SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence YKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDLICAQKFKGLTVLPPLLTD
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Known secondary structure (DSSP)



SS

STT


TTTS

TTSTT


S

S









TT

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence EMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS
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Known secondary structure (DSSP) TTGGGTSS




TT

T
 .........570.........580.........590.........600.........610.........620.........630
Sequence LSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTY
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Known secondary structure (DSSP) TT
SSSSGGG

TTSS
S
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTT
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Known secondary structure (DSSP) TSS


STTTSSSSTT
 .........710.........720.........730.........740.........750.........760...
Sequence APAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP
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Known secondary structure (DSSP) S
TTSSSSSSS
TTS



BSSSTTSSTT



B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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