PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c8gzhC_

Fold library id	PDB Header	Molecule	Title
c8gzhC_	2.96	PDB header: transcription/dna/rna	Chain: C: PDB Molecule: dna-directed rna polymerase subunit beta;

Links to external resources
Added to library: Sat Apr 22 11:37:49 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P D L I E I Q H A S F H W F L E E G L I E E L N S F S P I S D Y T G K L E L H F L G K D Y K L K Q P K Y D V D E S K R R D A S Y S V Q M Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T
S S S
T T
S S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P T R L I N K E T G E I K E Q E V F I G D L P L M T E R G T F I I N G A E R V I V N Q I V R S P G V Y Y K K E L D K N G R R T Y S A S L I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T S
S S S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N R G A W L K F E T D K N G L V Y V R I D K T R K L S A Q V L L K A I G L S D N E I L D S L S H P E F Y Q K T L D K E G N P T E E E A L V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B S
S S
T T S
T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L Y K K L R P P T V S G G Q Q L L E S R F F D P K R Y D L G R V G R Y K L N K K L R L N E A D T T R V L T P Q D I L A A I N Y L I N L E F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S T T T
B
T
T T
S
G G G T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V G T T D D I D H L G N R R V R S V G E L L Q N Q I R V G L N R L E R I I R E R M T V S E S D A L T P A S L V N P K P L V A A I K E F F G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence S Q L S Q F M D Q T N P L A E L T H K R R I S A L G P G G L T R E R A G F A V R D I H P S H H G R I C P V E T P E G P N A G L I G S L A T C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S T T
S T T S
S T T
S T T T S
G G G T T T B
S S
S S S
T T T B
S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence A R V N D Y G F I E T P Y F R V E S G R V R K D L D P V Y L T A D E E D D M R V A P G D I P T D E E G N I I G E S V P I R Y R Q E F S T T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
B
T T
S S
B S S
S S S S
T T S
B
T T S B B
S S
T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence P E Q V D Y V A V S P V Q I I S V A T S M I P F L E H D D A N R A L M G S N M Q R Q A V P L L R P E R P L V G T G L E A Q A A R D S G M V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
T T T T S
T S S S G G G B
T T B
B S S
S
S
S
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence V S R T H G I V T Y V D A T E I R V Q P H S G E E I V Y P I Q K Y Q R S N Q D T C L N Q R P L V Y A G E D V V P G Q V L A D G S A T E G G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
T T S
S S
T T
T T T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L A L G Q N I L V A Y M P W E G Y N Y E D A I L I S E R L V Y D D V Y T S I H I E K F E I E A R Q T K L G P E E I T R E I P N V G E D A L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T S S S S T
T T
T T
S
T T
S T T S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence N L D E H G I I R I G A W V E S G D I L V G K V T P K G E A D Q P P E E K L L R A I F G E K A R D V R D N S L R V P N G E K G R V V D V R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B
T T S B B
T T
T T
S
S
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence F T R E K G D E L P P G A N M V V R I Y V A Q K R K I Q V G D K M A G R H G N K G I I S R I L P I E D M P Y L P D G R P I D I A L N P L G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
S T T
T T
T T S
T T T S
B
T T S
B
S
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence P S R M N V G Q V F E C L L G W A G E N L G V R F K I T P F D E M Y G E E A S R D T V H G L L E E A S Q R P N K D W V F N E N H P G K I Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
T
S
G G G G S T T T S S S
S S
S S S T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence F D G R T G E P F D R P I T V G Q A Y M L K L V H L V D D K I H A R S T G P Y S L V T Q Q P L G G K A Q Q G G Q R F G E M E V W A L E A Y G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T T
B
S S
B S
G G G T
S S
B
S S S
B
S T T T T
S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence A A Y I L Q E L L T V K S D D M Q G R N E A L N A I V K G K S I P R P G T P E S F K V L M R E L Q S L G L D I A A H K V Q L S E D G E S A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S
T T
T T
S S
S

. .

Sequence A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	D	L	I	E	I	Q	H	A	S	F	H	W	F	L	E	E	G	L	I	E	E	L	N	S	F	S	P	I	S	D	Y	T	G	K	L	E	L	H	F	L	G	K	D	Y	K	L	K	Q	P	K	Y	D	V	D	E	S	K	R	R	D	A	S	Y	S	V	Q	M	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S													T															S	S	S									T	T							S	S							T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	T	R	L	I	N	K	E	T	G	E	I	K	E	Q	E	V	F	I	G	D	L	P	L	M	T	E	R	G	T	F	I	I	N	G	A	E	R	V	I	V	N	Q	I	V	R	S	P	G	V	Y	Y	K	K	E	L	D	K	N	G	R	R	T	Y	S	A	S	L	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S																		T	T	S				S	S	S	S												S										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	R	G	A	W	L	K	F	E	T	D	K	N	G	L	V	Y	V	R	I	D	K	T	R	K	L	S	A	Q	V	L	L	K	A	I	G	L	S	D	N	E	I	L	D	S	L	S	H	P	E	F	Y	Q	K	T	L	D	K	E	G	N	P	T	E	E	E	A	L	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	S									S	S								T	T	S													T											S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	Y	K	K	L	R	P	P	T	V	S	G	G	Q	Q	L	L	E	S	R	F	F	D	P	K	R	Y	D	L	G	R	V	G	R	Y	K	L	N	K	K	L	R	L	N	E	A	D	T	T	R	V	L	T	P	Q	D	I	L	A	A	I	N	Y	L	I	N	L	E	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	S	S	T	T	T		B														T					T	T			S																G	G	G	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	G	T	T	D	D	I	D	H	L	G	N	R	R	V	R	S	V	G	E	L	L	Q	N	Q	I	R	V	G	L	N	R	L	E	R	I	I	R	E	R	M	T	V	S	E	S	D	A	L	T	P	A	S	L	V	N	P	K	P	L	V	A	A	I	K	E	F	F	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S					S	S		T	T	S																																																										S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	S	Q	L	S	Q	F	M	D	Q	T	N	P	L	A	E	L	T	H	K	R	R	I	S	A	L	G	P	G	G	L	T	R	E	R	A	G	F	A	V	R	D	I	H	P	S	H	H	G	R	I	C	P	V	E	T	P	E	G	P	N	A	G	L	I	G	S	L	A	T	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S							S	S								T	T						S	T	T	S			S	T	T			S	T	T	T	S			G	G	G	T	T	T	B		S	S				S	S	S		T	T	T				B		S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	A	R	V	N	D	Y	G	F	I	E	T	P	Y	F	R	V	E	S	G	R	V	R	K	D	L	D	P	V	Y	L	T	A	D	E	E	D	D	M	R	V	A	P	G	D	I	P	T	D	E	E	G	N	I	I	G	E	S	V	P	I	R	Y	R	Q	E	F	S	T	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S				B							T	T					S	S					B	S	S		S	S	S	S						T	T	S		B		T	T	S	B	B		S	S							T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	P	E	Q	V	D	Y	V	A	V	S	P	V	Q	I	I	S	V	A	T	S	M	I	P	F	L	E	H	D	D	A	N	R	A	L	M	G	S	N	M	Q	R	Q	A	V	P	L	L	R	P	E	R	P	L	V	G	T	G	L	E	A	Q	A	A	R	D	S	G	M	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G						S		T	T	T	T	S						T	S	S	S	G	G	G	B													T	T	B			B	S	S					S				S										S		S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	V	S	R	T	H	G	I	V	T	Y	V	D	A	T	E	I	R	V	Q	P	H	S	G	E	E	I	V	Y	P	I	Q	K	Y	Q	R	S	N	Q	D	T	C	L	N	Q	R	P	L	V	Y	A	G	E	D	V	V	P	G	Q	V	L	A	D	G	S	A	T	E	G	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S									S	S																			S				T	T	S											S	S					T	T							T	T			T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	A	L	G	Q	N	I	L	V	A	Y	M	P	W	E	G	Y	N	Y	E	D	A	I	L	I	S	E	R	L	V	Y	D	D	V	Y	T	S	I	H	I	E	K	F	E	I	E	A	R	Q	T	K	L	G	P	E	E	I	T	R	E	I	P	N	V	G	E	D	A	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S											S	S	T	T	S	S	S						S					T		T	T																T	T							S			T	T			S	T	T	S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	N	L	D	E	H	G	I	I	R	I	G	A	W	V	E	S	G	D	I	L	V	G	K	V	T	P	K	G	E	A	D	Q	P	P	E	E	K	L	L	R	A	I	F	G	E	K	A	R	D	V	R	D	N	S	L	R	V	P	N	G	E	K	G	R	V	V	D	V	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B		T	T	S	B	B		T	T					T	T																										S						S										S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	F	T	R	E	K	G	D	E	L	P	P	G	A	N	M	V	V	R	I	Y	V	A	Q	K	R	K	I	Q	V	G	D	K	M	A	G	R	H	G	N	K	G	I	I	S	R	I	L	P	I	E	D	M	P	Y	L	P	D	G	R	P	I	D	I	A	L	N	P	L	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	T				S	T	T																	T	T						T	T	S											T	T	T	S		B		T	T	S		B		S					T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	P	S	R	M	N	V	G	Q	V	F	E	C	L	L	G	W	A	G	E	N	L	G	V	R	F	K	I	T	P	F	D	E	M	Y	G	E	E	A	S	R	D	T	V	H	G	L	L	E	E	A	S	Q	R	P	N	K	D	W	V	F	N	E	N	H	P	G	K	I	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	B																	T							S		G	G	G	G	S	T	T															T	S	S	S			S	S			S	S	S	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	F	D	G	R	T	G	E	P	F	D	R	P	I	T	V	G	Q	A	Y	M	L	K	L	V	H	L	V	D	D	K	I	H	A	R	S	T	G	P	Y	S	L	V	T	Q	Q	P	L	G	G	K	A	Q	Q	G	G	Q	R	F	G	E	M	E	V	W	A	L	E	A	Y	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B		T	T	T			B		S	S												B	S			G	G	G	T					S	S			B		S	S	S			B			S	T	T	T	T																S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	A	A	Y	I	L	Q	E	L	L	T	V	K	S	D	D	M	Q	G	R	N	E	A	L	N	A	I	V	K	G	K	S	I	P	R	P	G	T	P	E	S	F	K	V	L	M	R	E	L	Q	S	L	G	L	D	I	A	A	H	K	V	Q	L	S	E	D	G	E	S	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T	S	S														T	T																						T	T										S	S							S
	.	.
Sequence	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)