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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8gzgZ_

Fold library idPDB HeaderMoleculeTitle
c8gzgZ_3.13PDB header: transcription/dna/rnaChain: Z: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Apr 22 12:45:41 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTFYNYTIDKGRLKKLIALAYRRYGSARCSQLADELKELGFRFATKAGVSISVDDLTIPPEKKQMLEAAE
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Known secondary structure (DSSP)




S


T
STTT



STTS


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KEIRTTEERYARGEITEVERFQKVIDTWNGTSEELKDQVVVNFRKTDPLNSVYMMAFSGARGNMSQVRQL
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Known secondary structure (DSSP) TTTSS
S
SS
TTSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence VGMRGLMADPQGEIIDLPIKTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVR
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Known secondary structure (DSSP) S

B

B
SSS
B
SS
B


TTT


SSS
B

 .........220.........230.........240.........250.........260.........270.........280
Sequence EQDCGTERSLRVTAMTDGDQVKISLADRLFGRLLAKDVVGPDGEIIAKRNDEIDEALANRIAAVTDEVYV
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Known secondary structure (DSSP)
S









SSS
STT

BSS
B

SSS

SB
TT



TTTTTT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence RSPLTCEAARSVCQNCYGWSLAHGHKVDLGEAVGIIAAQSIGEPGTQLTVARQEKAPEDGTVKWGKGLST
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Known secondary structure (DSSP)

GGG


SSS


B
TTTSSB

SS
BSGGGG








SS

B

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RKVRTRHGEDAEQVEIAGDLIWKGEGKKQTYSLTPGSLLFVQDGQTVTAGQLMTEISLTERATKDVAGDL
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Known secondary structure (DSSP)
SSSS
S

B


SS




B

TT


TT
B

TT








SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence AGEVLFDRLVPEEKTDRQGNTTRIAQRGGLVWILSGEVYNLPPGAEPVVKNDEQVEVGSIMAETKLVTND
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Known secondary structure (DSSP)
SBS


B



SSSS


B
SS





TT


SS

TT




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GGVVRLVSNREIEIITASVLLDQAQVKLESSGGREQYVIYTADKQRFLLKAAPGTKVQNHSIVAELIDDR
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Known secondary structure (DSSP)



SS
SS

B

TT





SSS



TTS

S
TTS
B
TT


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YRTTTGGMIRYAGVEVAKGGRKQGYEVTKGGTLLWIPEETHEINKDISLLIVEDGQYVEAGTEVVKDIFC
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Known secondary structure (DSSP) SB
SS
S

B

S
SSS
B
S


B






STT

S
TT
B

SS

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence QSSGIVEVVQKNDILREIIIKPGDFYQDVDPGSVKIESGQLLQPGQDVFPGVTVSTLSQAEWIESPEGGL
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Known secondary structure (DSSP)


SSSSS




STTSSS
B
TTS
SBTTB

SS




TT


 .........710.........720.........730.........740.........750.........760.........770
Sequence LLRPVEEYKVFDEPAAPSQGSQNEEGGRQIELRSVQRLFYKDGDRVKSVEGAPLLSTQLVLEIYHLSADI
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Known secondary structure (DSSP)


B


SS






B
S

SS




B




TT




SS

BS







B
 .........780.........790.........800.........810.........820.........830.........840
Sequence ELQDDEEEDCQRLQLVILESLVLRRDESDPLGGASKTRLLVQDGDQIPPGAVVARTEIQCKEAGTVRGIK
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Known secondary structure (DSSP)

SSSSS










TTT


SS
SS
B

SS

SS



 .........850.........860.........870.........880.........890.........900.........910
Sequence EGQESIRRVLLERAADRLVVDLPSAPEVKPGQLLVAGQELVPGVKLEESGKVLEIYQLVLRRARPYRVSP
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Known secondary structure (DSSP) SSSS

S
GGG
SS




TT

TT

SSTT



S






T
 .........920.........930.........940.........950.........960.........970.........980
Sequence GAVLHIEDGDLVQRGDNLVLLVFERVQGLPRIEELLEARKPKEACVLARAPGVCQVEESVDIKVVEDDGT
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Known secondary structure (DSSP) T



SS
B

TT



TT


S


B
SS













B

SS
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VSEYPLLPGQNAMVTDGQRIDVGHALTDGYNNPHEILDVFFSYYVDKDGCYQAALRGLQAAQKFLVNEVQ
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Known secondary structure (DSSP)

B




TT





SS


SS
B

SS


TTTTTTTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TVYQSQGVDISDKHIEVIVRQMTAKVRIDDGGDTTMLPGELVELRQVEQVNEAMGITGSAARYTPVLLGI
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Known secondary structure (DSSP) TT



SS


SSSS

TT
TTT








T
 .........1130.........1140.........1150.........1160.........1170.....
Sequence TKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFS
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Known secondary structure (DSSP) TTTTTSSS
STTS
T





STTTTS

SSGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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