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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8gzgD_

Fold library idPDB HeaderMoleculeTitle
c8gzgD_3.13PDB header: transcription/dna/rnaChain: D: PDB Molecule: dna-directed rna polymerase subunit gamma;


Added to library: Sat Apr 22 11:32:33 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PRFDYVKIAIASPERIRQWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECWCGKY
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Known secondary structure (DSSP)


S











SSSS


B





B
SSSS
B
SSSTT


SBTTB
SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYLSILLDMALRDVEQIVYFNAYV
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Known secondary structure (DSSP)
SSS

S
B
SSS

B


GGGTTT



SSSS
TT

TTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VLNPGNASNLQYKQLLTEDQWVEIEDQIELEGIEVGIGAEAVQRLLAELQLEEVAEKLREEILASKGQKR
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Known secondary structure (DSSP)
TT
SS

TT

T


S


TT

TTTSS
GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence AKLIKRLRVIDNFIATHSQAEWMTLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQE
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Known secondary structure (DSSP) TT

GGGG


GGGS


TTS


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
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Known secondary structure (DSSP) TT

STTSSS


B
SSSSB


SSTTTSSTTSTSS


SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence IVVGPNLKIYQCGLPREMAIELFQPFVIHRLIKLGIVNNIKAAKKLILKGDPQIWSVLEEVITGHPVMLN
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Known secondary structure (DSSP)

S

SS
TTS
SSTTT
STT

 .........430.........440.........450.........460.........470.........480.........490
Sequence RAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQCEARLLMLACHNVLSPA
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Known secondary structure (DSSP)
SS

SGGG
SSSS
TTST

TTT



STSBGGG

B
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TGKPIVAPSQDMVLGCYYLTAENPNAQKGAGRYFAGIEDALRAYDHGQVDLHSQIWIRHLDEDVVTEKPD
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Known secondary structure (DSSP) SSSB

S

ST


SS

SS
SSSTTTS

SS




S



SS

 .........570.........580.........590.........600.........610.
Sequence TEVIKTEDLGDGTVMKYYRERKIREGIITQYIQTTPGRIIYNKTIAEALVF
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Known secondary structure (DSSP)



S

STT

SS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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