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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8fxiC_

Fold library idPDB HeaderMoleculeTitle
c8fxiC_2.70PDB header: ligaseChain: C: PDB Molecule: rimk domain-containing protein atp-grasp;


Added to library: Sat Jun 17 13:21:37 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VEPVRINARTTDVFDIFNVKQYVGANPYLNQAALVFDFAFTESYQPLPIENYLAVVGDRYPRLKEIEYQS
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Known secondary structure (DSSP)




TT

SS

SS

SS
SS

SSS



TT
S


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence YAELFASTVAEVNKLEMDLHLKGWNVKPIEEINRIAIESLHHRTTKEVVYCVWDWFEFITQGEEFDLSKQ
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Known secondary structure (DSSP) TTTTTT
S


TT
SSSS




 .........150.........160.........170.........180.........190.........200.........210
Sequence IAILQQLFRNSVYGGPTVYALLRTANEKHIPAFYLWDEGLMQYGYGKQQVRGIATTFDVDSHIDSDFTTQ
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Known secondary structure (DSSP) SSSS
STT


TTTT
S
GGG

TTTTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence KDDCKKFLQELGFPVPQGDVVFSLAEAKEVAAEIGYPVAVKPVAGHKGIGVTADVQDEIELEAAYDRAVA
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Known secondary structure (DSSP) TTTTT





SSTT
S




BSSSS





SSS
TTTST
 .........290.........300.........310.........320.........330.........340.........350
Sequence GIPLEEKICIIVENSIAGHDYRLLCVNGRFVAATERKPAYVVGDGYSTIAELIEKENFSPNRSDTPTSPM
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Known secondary structure (DSSP) T

SSS


SS

S
TT

S


S
SSSS


SSS
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GKIRTDEAMHLYLEEQGLDLDSVIDRDRTIYLRKVANLSSGGFSIDATNRVHPDNIILAQDIAQHFRLTC
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Known secondary structure (DSSP)





STTTTTS
SS




TT

S
SS

TTSS
TTS

TTS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence LGIDIITNDIGRSWKETSFGIIEINAAPGVYMHLKPAIGEPVDVTARILETFFETEKNARIPIITFNRVS
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Known secondary structure (DSSP) S
TTS
TTSS
SS


STTTS
SBS



TTT
SSGGGG


SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence IRQLQKLSDRILMSHPDWTIGAVCREGILINRSEKILNRHYNTNVLNLLRNPKLDLLIAEYDEDALEAEG
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Known secondary structure (DSSP) TTT
TT


SS
TT



SST
TT



T
 .........570.........580.........590.........600.........610.........620.........630
Sequence MFYHGSNLVVLEDPSEIEMILTRDVFSDSTVIIKQGREITIKRKGLLEQYELEAEELIEQVYLKEIGTIS
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Known secondary structure (DSSP)
SS

S

TTGGGGGTSTTTT

SS

TTTSTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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