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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8foj1_

Fold library idPDB HeaderMoleculeTitle
c8foj1_4.80PDB header: dna binding proteinChain: 1: PDB Molecule: dna polymerase;


Added to library: Sat Jun 3 17:10:42 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TFQMFWLDYCEVNNTLILFGKVCVSAMVQINGLCRELFFLPREGKTPTDIHEEIIPLLMDKYGLDNIRAK
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Known secondary structure (DSSP)
TT






TT



S

 .........80.........90.........100.........110.........120.........130.........140
Sequence PQKMKYSFELPDIPSESDYLKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCW
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Known secondary structure (DSSP)

SSSTT

SS

SS
TT



TT


SSSTT

TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LDIKGASHCAVEVSVDKPQNITPTTTKTMPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNNIKPDDLC
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Known secondary structure (DSSP)


BSSSSSGGG









TTTT





S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TLVRPPQSRVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAHRMHDLNIPTFSSIGRRLRRT
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Known secondary structure (DSSP)

S



SS

SSSTTTTTT
TTGGGGSSB

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence WPEKFNMNHFFISDICSGRLICDIANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVN
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Known secondary structure (DSSP)

TT

TTTSSSST
TT
SS











TTSGGGGT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SMTMALQENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDK
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Known secondary structure (DSSP) T
S
T
SSSTTTTTTB




 .........430.........440.........450.........460.........470.........480.........490
Sequence VFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPQGVLPRLLANLVDRRREVKK
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Known secondary structure (DSSP)





SS

TTT
STTTS


SS
TTS






 .........500.........510.........520.........530.........540.........550.........560
Sequence VMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVY
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Known secondary structure (DSSP)


TSGGGT


TT

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNTTVLEVKGL
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Known secondary structure (DSSP)
SS
S
S

TT



SSS


SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence DMKRREFCPLSRDVSIHVLNTIEEALQEVYDYLEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMP
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Known secondary structure (DSSP) GGGSTTS


T
S
GGGG

SS
TT

TTTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence AVQVALRMRKAGRVVKAGSVITFVITKLSVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLERI
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Known secondary structure (DSSP) T



TT
B


TTTTSGGG


B
TTTTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence DSFNVVRLSEALGDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQ
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Known secondary structure (DSSP) TT

TT

TTTTTT




TTT



SSS

SS
SSSTTT

B

 .........850.........860.........870.........880.........890.........900.........910
Sequence IEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCE
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Known secondary structure (DSSP) T

S
TTT





SSTTB
SSTT


B
SS
T
 .........920.........930.........940.........950.........960.
Sequence KNKKQELKPIYLPDDLDYPQLTESSIKALTEQNRELMETGRSVVQKYLNDC
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Known secondary structure (DSSP) T



SS
TT
TT




TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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