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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8fjpA_

Fold library idPDB HeaderMoleculeTitle
c8fjpA_3.30PDB header: allergenChain: A: PDB Molecule: salivary gland surface protein 1;


Added to library: Sat Mar 4 10:22:41 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLRIKEVKKYNNRLGFPAGKEVRIRPLLEAGGFARGPIYVKYGRELSKHDPSSRSMAWNATVFDTALNHP
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Known secondary structure (DSSP)
B
SS




TT





SS





TTTTTT


S
SS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence TRPWTVTVVGGKKMVLGVRKEGLGFSEDDPPRSLNVKGGDDMADENYGGGNSTIVLVKSGGKDFAIGLDD
Predicted secondary structure






























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Known secondary structure (DSSP) SS
TT
TTS
SS




B
S







TTS


TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKELNSFGIGAGNGKLSLALGNPVNVLTGVVLPVEQRDGSVAYVAVNSDTKSVIYKVDAKGLQKNQKIDV
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SS confidence





































































Known secondary structure (DSSP) S


B


STT
B
B







SS



B
SSSSS
S
SSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence NVRASAEKILLTKNNELLHISPQGLNVYSVQGSASTFKYFCPYFSSFGGWSRRFVDTVTLMDEGGNQEAL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)

S


S
TTS
SS

SSSTT
SSSTTTT

TT

SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IGTGPKGIEYMPVDEKCKNYVVEGVQDAKHAVVAPGATKEGNDIKVLGVYNGELCLLTLEVVDAVEPKLD
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Known secondary structure (DSSP)
SSS
SSS


B

S
SSSS

SS
TT
SS










 .........360.........370.........380.........390.........400.........410.........420
Sequence QGSPAKPSAERVKATKSSKVTVRSGALSKPVSWLRDSLDEASFKNIVDKLSGKIRFSFPLVDLQGRMGLP
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Known secondary structure (DSSP)
SS










SS
SS







S
SGGGTS
B
TTTS
B


SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence IKLVVYYDESDGEDMSVLGRHWTLGRDCIVLDHGNTVFEDKQDYYLVKDQMKIRLERDWTKPSANGKVLF
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Known secondary structure (DSSP)

S




SS
TT



S


TTT
TT
TT


TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence NMVGNKDATFEYTAREEKWEVSDGKIRYVYGMNNQGVVSVPGWADWYGPSANYDSKKIHSVQWNLVEISS
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Known secondary structure (DSSP) TTTTTT
SS
TGGGT


SS

S
BSS

SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VAHRDVKLKYTYTPLDPSTHTMHLLSITDDSNKTTIKFSYKTIEGLGKQVSSGLVKEHKFINNKLLEKVE
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Known secondary structure (DSSP) SSSTT




SSS




SSS


SSSS





SSB






 .........640.........650.........660.........670.........680.........690.........700
Sequence IDSPSTAQVLKLTSTKIDSLYYLESIKQDDDPDPVLGFEYNKDDKLKPRVQQIRLPSKSVVDFKYTKQAI
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SS confidence





































































Known secondary structure (DSSP)
SS
TTTT
SS
S
SSSSS

TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence ATQQFEQEIAKMADLYTGNEYSLEIEKTVGETDLYVRLKDSAGKNDFIKNQSIRIESYRGFKIKSYSPFM
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Known secondary structure (DSSP) STTT

TT

SS

STTSS
TTSSSSSS




SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence MHSYIAILVRYAEEKEKLHNKIYILNKGEDDSWKLDTTNNNSRVSEDKKFKYDFQEDSFVYYHSKKVHFE
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Known secondary structure (DSSP)
SSTTT

SSS


B




SSS

S


SS
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence YKKSGTKVWSYTSKDIGDVDAFTLMNRGAVYCKNDLVLIRWDALGKLQQETLSDAKSKPSISDVDTFFEY
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Known secondary structure (DSSP)

S
SS






SS

B
SS


SSS

TT



SSS


T
 .........920.........930.........940.........950.........960.........970.........980
Sequence IDVQGTFPEDEAEAKKEVDDYKRDLKESLSDYGLILYNNVVALRTIKLSFTGRITVKVLLYLLKHDYTVS
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Known secondary structure (DSSP) B



S
SS
TSTT
TTS

TTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SRSSIELQGGDLAKFNLTLDVFDEHKTKNTNDLDKYRFEFKKQGSKFKLTYIEATDKDNKPTKPSSQNEK
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Known secondary structure (DSSP)

TTT


TTT
S
TT

TT
TTS
B



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LIGQYERRMKIPLDFEKYMMQVNQEGIIVNDHQIIHDNGNFIAKQLDRDTLKLTKFKIPLGAFSNFKKDS
Predicted secondary structure




















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Known secondary structure (DSSP)




S

SS
TTTT

TTSS
SSS
S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence DGDEIKLCTKTEQERTESCVSLQTNSARNVSIKYPYYLVTQKKNDIKVLPLKINSRGWEDSVDYRGEILH
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Known secondary structure (DSSP) SSS



SS




S
S
SSS
B

TTS
TT
B
GGGS
B


TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence GSSSHAAMVTTRMSDQKTIVRPLKALNKINKIYAQVISEEKLTTPYDSYVIKYEYEDPVVSMNQVAFKTT
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Known secondary structure (DSSP) TT

SSTTT

GGG

TTS
SS
TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence IVVPGGGKSATGYYRETNDLQDNQQIVQVMTADNQVFDPEYVKRMNEMQQEEDKQRDGAQLDAEQTITDK
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Known secondary structure (DSSP) SSS


TTT


TTS
TTTTT







TT

S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SGYHPILKTTPYSANQELVQFLGFEDYEDMTGWTVNKRPIQESNIRRNEFSATGRNFLLLKKGEELIAEF
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Known secondary structure (DSSP) SSSS
S
SSS
TTSTT

SSS


SSS
BSSSS

TTT
SS

SSSS

SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence PNTAYYDNFIASTWIRTAQEATVGSTTDMLLLYVDNKPMKGTIKQSIDEWIYVEADSREIVVSESTTVKR
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Known secondary structure (DSSP)


S
SS
T
TTTT
S


SS
SS


 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VLFKIIVKSTGADDVHVDHVRLSPVNFNFEGSVYDARIGQRTATIQTNGFVSRRLYDAYNRRIAEVDETG
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Known secondary structure (DSSP)
SSSS
SSS



TTT
S
TTS

TTS

TTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence NIKYLASYSKRVGNTKDEKKREGGYSSRIQMRAKHSWVESFSPYTMEKRWQIGGTATVEPNQAILQGQII
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Known secondary structure (DSSP)


SSS

SS


SS

S
S



TTT
S
TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SKEKFSSESICIRLVYSMSGSSQLSLTIGKTTVVVKPNAVQYKGHTATTPSNAELVIFATPKLTSIWVDG
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Known secondary structure (DSSP) SS
B
SS




TT
TT
SS
SS


SS

SSTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence HLRIEAPETHAKFNNEAVSLQTSGPVGIKDVIVMEDAEIQVSYLNRDSKPLQEILLLDSSNVLIRQMMYD
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Known secondary structure (DSSP)






SB


S

TTS
TT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence VIGRRVAETVWVQKSLIDGRSTAFKAFQYHDDFVSNDNPTDRNYFLNTGPMQGYVATATNTIYEGYPYSQ
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Known secondary structure (DSSP) SSS



STT
TTS


SSS

GGG
SS

SSSS

TTTS
S



SS
SSTT


 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence TVYYNNPLEIRHKVGHPGVKNSIKGAFVHQYAIASDLAFIQRNYPKNEGYRQEEEKSPNGKKHVVVYNRR
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Known secondary structure (DSSP)
SSSS


SSTTTSSSSSS

BSS
S
TTTTSS
TTT
TT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence NKKVAEYTQVKDYNNILTTYIYDQHGNQIQMLPPSYYHEKSRSGDYQPEKQVVASPWAVTSKYDSTGEFI
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Known secondary structure (DSSP) S
TT
TTS

T
SS





S



TT

TT

S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TSKETPDGGRVEFIYNEYNQLRYQIHYKEDKQADKIVYFLYNIFGRMCEAGQVPANPTTLQQVRETTKSH
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Known secondary structure (DSSP)
SSS

TT


TTS

SSSS


 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence QAIPNRDQAVYFDYGETESEPSLRGRIQRTVKKNKEVLFSEVMFFDEESNIIRKSYISPTTNETLSLVYL
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Known secondary structure (DSSP)


S

SSSS
SSGGGTTTTT
GGG


TT
SS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence QENDKVSGIQYPFGVDGKQLILKYKHNLRGEIVEVARVEQKTSGQTEFIPIAGIDHDAEGKVTKISHNYG
Predicted secondary structure
































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Known secondary structure (DSSP) TTTT
TT
S
TTS

SSSB
SS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence DSKFDQTYKYVAPGYLVEIANNFLTEKLYYTEKGYGCEPTGDGSILRTEFKASWHDKCDQNLIPLTARAF
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Known secondary structure (DSSP) S


SSS

SSSSS

SS



TT




GGGSS
GGGSS

SSSS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence VSGGIDFTTAETCFDALLNLGYIDTTGRPVKTFYPDLETGLPMKCATPSNWRYISEKMLEQGYPEHYGHA
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Known secondary structure (DSSP)
SSSS
TTSB
SSS
B
S


TTT
SS

SS


S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence YDYGSHGELIAAKSFVGKEKDSLTAPLSKASFANAGMKSHELDRFWDSLSRSINKVEGTKAIFEGTQQLT
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Known secondary structure (DSSP)
TTS


SGGGSS



STT

GGGGTS


GGGGGGGG
TTTT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence TGLVGSVIHKPKLESLLEGKGGDSSICTPWSSGDRTEEAKCKREYQQAFDKLKLKQVIQSLQEPVRKNVL
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) SSTTTTTTT

TTTT
T
SS
ST

S
TT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence RILKNTLASMLGNSPGDVESFSIDPNGNHGVFYTGFKRFELKYKHQKNQIATIKEGTKQQEKMIVHDDEG
Predicted secondary structure



































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Known secondary structure (DSSP) STTS
SS


B
TTS
BSTT
SSSSS
STT



TTS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence NVIKALHKKIDKIEYDPLTQRVSRIEMSDRSRTLEFGYDFRGERTFKRVRNKDNDIISVNYYVRDNKGNV
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
GGGT
TTT
SGGG


TTS

TTS

TTS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LVEYKQEYPNPKDTNKPINTVTAYIHGPLGLLGFFRNNKYYNVLLDHEGSTRLVIHQGKVVAAYDYLPYG
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
SSSS
TTS

SSSSS

GGG
TT
TTS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence QMIRKYGSNPEAHIAFRYTGQEFDEETGLYNYHARLYDPDIGRFFQMDPMEQYASPYKYAGNSPVSQIDP
Predicted secondary structure














































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Known secondary structure (DSSP)




TTT

S
TGGG

TTTTTTSSTTTTSS

SS

SSSSSB

S





B
T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence DGQIAVTLVLMIIGAIVGAYLGAASANNSWNPAKWAWALATGVISVAGAFLGAAAASNQWNPAKWDWTSP
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SS confidence





































































Known secondary structure (DSSP) TTTSSSTT

S
GGGS


TTSSGGG


SSS
GGGSS


 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence AVWNGLLSGASIAVSFPSGFVGITRSFMSISSNLVKMIYASLMVGGFLLFVYLGGGMANNFNFQISQWDW
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)





TTTSSS



BSS

STTTT

TTTTTTTGGGS
S

T
 .........2880.........2890.........2900.........2910.........2920.........2930..
Sequence KSPRTWFGMIVYNVVKPNGLKMIWMRRVKDTIILTWYKNGQSISKQILMAGLMFKKNQYFFT
Predicted secondary structure















SS confidence





























































Known secondary structure (DSSP) T
GGG






SS

GGGSSS











Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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