Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8fdgA_

Fold library idPDB HeaderMoleculeTitle
c8fdgA_3.20PDB header: blood clottingChain: A: PDB Molecule: coagulation factor v;


Added to library: Sat Mar 18 10:59:17 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AQLRQFYVAAQGISWSYRPEPTNSSLNLSVTSFKKIVYREYEPYFKKEKPQSTISGLLGPTLYAEVGDII
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)



S

SSSSS

STTS

B
TTS
SB



SS
SS



TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KVHFKNKADKPLSIHPQGIRYSKLSEGASYLDHTFPAEKMDDAVAPGREYTYEWSISEDSGPTHDDPPCL
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP)


SSS
B

B
SSS


TTS



SS



GGG
SSS
B
TT
B



STT
S
SSS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence THIYYSHENLIEDFNSGLIGPLLICKKGTLTEGGTQKTFDKQIVLLFAVFDESKSWSQSSSLMYTVNGYV
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) B

S
TTB


TT


TTS

SS
S
TTSSSS



TTB
 .........220.........230.........240.........250.........260.........270.........280
Sequence NGTMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLEQNHHKVSAITLVSATSTTANMTVGPEGKWII
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) TT




SS


B
SS

TT

TTSSS



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence SSLTPKHLQAGMQAYIDIKNCPKKTRNLKKITREQRRHMKRWEYFIAAEEVIWDYAPVIPANMDKKYRSQ
Predicted secondary structure































































SS confidence





































































Known secondary structure (DSSP)

S




TT


S
SS


S

SS


TT
S
TTSSSS







 .........360.........370.........380.........390.........400.........410.........420
Sequence HLDNFSNQIGKHYKKVMYTQYEDESFTKHTVNPNMKEDGILGPIIRAQVRDTLKIVFKNMASRPYSIYPH
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP)




SS
SS



SSS
SSS





S

SS




SSSSS
B

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence GVTFSPYEDEVNSSFTSGRNNTMIRAVQPGETYTYKWNILEFDEPTENDAQCLTRPYYSDVDIMRDIASG
Predicted secondary structure





















































SS confidence





































































Known secondary structure (DSSP) SSSSS

TTTS
TTT


TTT




B
TT

GGG


SSS
S
SS
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LIGLLLICKSRSLDRRGIQRAADIEQQAVFAVFDENKSWYLEDNINKFCENPDEVKRDDPKFYESNIMST
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP)


SSS
TTS
SSS


TTTSTTSS
TTS

TT
GGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence INGYVPESITTLGFCFDDTVQWHFCSVGTQNEILTIHFTGHSFIYGKRHEDTLTLFPMRGESVTVTMDNV
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTB
SSS


TT

S

S

B
SS



BTTB

S

TT




 .........640.........650.........660.........670.........680.........690.........700
Sequence GTWMLTSMNSSPRSKKLRLKFRDVKCIPDDDEDSYEIFEPPESTVMATRKMHDRLEPEDEESDADYDYQN
Predicted secondary structure




















































SS confidence





































































Known secondary structure (DSSP)

S

SS








SS
SSS

S
SSSSS
SS
SSSSSS

TTS
S
SSS




 .........710.........720.........730.........740.........750.........760.........770
Sequence RLAAALGIRSFRNSSLNQEEEEFNLTALALENGTEFVSSNTDIIVGSNYSSPSNILGQMPSPSSPTLNDT
Predicted secondary structure

































































SS confidence





































































Known secondary structure (DSSP)


SSSS


SS











BTTB



SS



SSS

SSS







SS



GGG



S

 .........780.........790.........800.........810.........820.........830.........840
Sequence FLSKEFNPLVIVGLSKDGTDYIEIIPKEEVQSSEDDYAEIDYVPYDDPYKTDVRTNINSSRDPDNIAAWY
Predicted secondary structure



































































SS confidence





































































Known secondary structure (DSSP)










S
SSSSS

SS





STTTT
SSS



SSS

SS


TTTT


SSS

TTTTTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence LRSNNGNRRNYYIAAEEISWDYSEFVQRETDIEDSDDIPEDTTYKKVVFRKYLDSTFTKRDPRGEYEEHL
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)

TT



S

TTTTT

S
S
SSSSS
SBSSTT


B



SSTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence GILGPIIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAVQPNSSYTYVWH
Predicted secondary structure




















































SS confidence





































































Known secondary structure (DSSP) TT



TT

SSS
B

B

SSB

SSS


S

S


SS

S
S
B
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ATERSGPESPGSACRAWAYYSAVNPEKDIHSGLIGPLLICQKGILHKDSNMPVDMREFVLLFMTFDEKKS
Predicted secondary structure





















































SS confidence





































































Known secondary structure (DSSP)

GGGS

SSS
S

B

SSTTTTTTTT




TT
S
SSS


SSS


B
TTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence WYYEKKSRSSWRLTSSEMKKSHEFHAINGMIYSLPGLKMYEQEWVRLHLLNIGGSQDIHVVHFHGQTLLE
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)
SSS





S
STTTSS
B

SSS
SS





SS

S
SS

TT


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence NGNKQHQLGVWPLLPGSFKTLEMKASKPGWWLLNTEVGENQRAGMQTPFLIMDRDCRMPMGLSTGIISDS
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)
SSS

S

TT

S

TTSTTTTTS


S



SSSSS
S
GG
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QIKASEFLGYWEPRLARLNNGGSYNAWSVEKLAAEFASKPWIQVDMQKEVIITGIQTQGAKHYLKSCYTT
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) G
S


SSS
SGGG

SS

SS


S


SSS






TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence EFYVAYSSNQINWQIFKGNSTRNVMYFNGNSDASTIKENQFDPPIVARYIRISPTRAYNRPTLRLELQGC
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) SSSS




S
SSSS





SSSS

SS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence EVNGCSTPLGMENGKIENKQITASSFKKSWWGDYWEPFRARLNAQGRVNAWQAKANNNKQWLEIDLLKIK
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) SSS

S
SS
TTTTS
TTSS


S

TT
SSSSS
TT


TT

SS

S


SS

SS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence KITAIITQGCKSLSSEMYVKSYTIHYSEQGVEWKPYRLKSSMVDKIFEGNTNTKGHVKNFFNPPIISRFI
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)





SSS


SSSS


B
SSSS
B






SSS


 .........1480.........1490.........1500.....
Sequence RVIPKTWNQSIALRLELFGCDIYEDQVDPRLIDGK
Predicted secondary structure




















SS confidence


































Known secondary structure (DSSP) SSS






TT




SSGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D