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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8f6pA_

Fold library idPDB HeaderMoleculeTitle
c8f6pA_3.20PDB header: membrane proteinChain: A: PDB Molecule: sodium channel protein type 5 subunit alpha,green


Added to library: Sat Apr 15 11:26:12 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HPVRRAAVKILVHSLFSMLIMCTILTNCVFMAQHDPPPWTKYVEYTFTAIYTFESLVKILARGFCLHAFT
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Known secondary structure (DSSP)
ST
SS

S
SSSSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FLRDPWNWLDFSVIVMAYTTEFVDSALRTFRVLRALKTISVISGLKTIVGALIQSVKKLADVMVLTVFCL
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Known secondary structure (DSSP) TTTSTT


GGGGGGGGGGG
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SVFALIGLQLFMGNLRHKCVRNFTELNGTNGSVEADGLVWNSLDVYLNDPANYLLKNGTTDVLLCGNSSD
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Known secondary structure (DSSP) STTGGG



BSTTSSS
B
GGG

BS

GGGS
B
TTSSSB



SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AGTCPEGYRCLKAGQNPDHGYTSFDSFAWAFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGS
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Known secondary structure (DSSP) S



TT

S

SGGGTS
SSSTTSST
GGGTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FYLVNLILAVVAMAYEEQNQATIAETEEPFADLTITMCIVLNTLFMALEHYNMTAEFEEMLQVGNLVFTG
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Known secondary structure (DSSP)


S

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence IFTAEMTFKIIALDPYYYFQQGWNIFDSIIVILSLMELGSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNS
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Known secondary structure (DSSP) S
TTS

GGGGGGGGGGGS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRHRISDSGLLPRWHMMDFFHAFLIIFRILCGEWIETM
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Known secondary structure (DSSP) TTTTT
SSSS

SS
SSST

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence WDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFWWRLRKTCYRIVEHSWFETFIIFMILLSSGA
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Known secondary structure (DSSP) S



 .........570.........580.........590.........600.........610.........620.........630
Sequence LAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLVSLVANTI
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Known secondary structure (DSSP) TT

TTTTT

T


 .........640.........650.........660.........670.........680.........690.........700
Sequence KSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEG
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Known secondary structure (DSSP) GGGGGGGGGGTTTSTT

STTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence DLPLNYTIVNNKSECESFNVTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQ
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Known secondary structure (DSSP) TSB

TTT

BT
SSTT
SS

SSSTTSSTT

STTB


 .........780.........790.........800.........810.........820.........830.........840
Sequence WEDNLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNMMKKLGSKKPQQG
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Known secondary structure (DSSP) SS
STTTTTTT

SS

T




 .........850.........860.........870.........880.........890.........900.........910
Sequence FIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNILAKINLLFVAIFTGECIVKMAALRHYYFTN
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Known secondary structure (DSSP) TST

TT

TS
T
 .........920.........930.........940.........950.........960.........970.........980
Sequence SWNIFDFVVVILSIVGTVLSDITLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLV
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Known secondary structure (DSSP) T

GGGGGGGG
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNLPNSNG
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Known secondary structure (DSSP) TTT



TT

SSS
SSSTTTT

STTT

SS


SS
 .........1060.........1070.........1080.........1090.
Sequence SRGNCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA
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Known secondary structure (DSSP)
S
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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