Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8f5pC_

Fold library idPDB HeaderMoleculeTitle
c8f5pC_3.40PDB header: protein transportChain: C: PDB Molecule: intraflagellar transport protein 122 homolog;


Added to library: Sat Dec 24 10:23:22 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MHTSVRWSETADAVKGIRPPVNSLCYSPSGDYVVASCGVRVLVYAASTGTLLHSLMGHQDTIYCVDYSSD
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)



BTTB






TTS
TTSSS






SS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GKNFASGGADRTVIVWSSQGEGIVKYQHTEAIQALAHNPTSSQLASVSSVDWGIWSPEQPKVSKYSLPSK
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) SS
SSS
SSS

SS

SSSS
SS

SS








SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLCAAWTPNGKTLAIGMLDGTVMMLSKTSEEKVIIRRPAPVWALAFTPLRENGIDVLAIGSWDQRLSFYN
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)


TTS


TT

B

SS





B

SS

SS
STT

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LSGTAVGRERELDFDPCSVSYFNDGEYILLSGSDHKVTLFTKDGNRLIELASADDWIWSARQRPRQKQFC
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTS
B
S


SS
TTTTTTSSS


SS

TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence YGTNDGTISCIDITISTVHTIYDDQYVFRKDMTNLVVHQLLVDRKMVIPCNEYVQKIATFLDKLAVQLQE
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SSS



TTTTTTTTT

S


TT
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RVIVFEFFYDDDRTMRYQDIAQIRRRLECSLLCVTTGAIIVSNDKRITMYDFQGNKRREWSMESPVQLMK
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

TTS






S
SSTTSSS

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VVGGMEGREILLVGLNGGQVMKVFVDNPFPTLLHKGTAPVKSAELSSSRSRLAVIDSTNTLQVLELGEKN
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
STT

TTS

SS
SS

SS

S
SSSS
TTS

SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence ELLFSEDNVTAVAFNIDVDDNIAFTTGDNTLHIKTGSLPAYQQAVRGIVVGFKANHVFNLHYSNMMVLDV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) SS
SS
SSTTS
TTS




SS
SSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence PHAHALYKYVEMRDFDRAYEVACLGVADADWKMLGLHAMSQLRLDIARKAFTHIQDTKLVELLKSLELRR
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
TT

T


TT
TTTT

 .........640.........650.........660.........670.........680.........690.........700
Sequence RQKDSVLYGSILAFQGKYNDAARQFMKTGCELKAVEMYCDLKMWDNAKKICTDEKVLKDLIRQQARWAEE
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) T

T
TT

TT



 .........710.........720.........730.........740.........750.........760.........770
Sequence SQNFVEAASLYESCGDYAKAIGMMGQAGQVEKLMKMCRSLPTSEVTLITECANFFRKHNAIPFAIEAYEK
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TT
T
T
S
GGGTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence VQDHQALIGIYVAKGDWRNAFTILEKTPTLAREVYVPWATWLADNDKFDEALEAFRAAKWPKEAMRLMET
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) T
T

SGGGTTT
T

 .........850.........860.........870.........880.........890.........900.........910
Sequence LATNSVTCRKFRDAAFYYIHLAEEYGRFEETEKPTDVEKAARIRRSKECVRRADIYYAFSGVYAHTTQPL
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TT
TT


TT



S

 .........920.........930.........940.........950.........960.........970.........980
Sequence PYNELSLFRTAKYLFGMCAESAIPINVGKGAILYTLSRIANRLEMVRTARAVFEKLQGVILPVSMMEQVD
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)


SSSS


TT

TT
TTS


TTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IETLLVRSKPVKDRDELLDRCFRCNQLIAQLPMAGDRCPNCFHPCVRSFVNFECLPLVEFVLADELTDEE
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) TTSS
S


SSS

TTTT

S


TTSB
TTT

B

B
SSS

B
S
TT

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AERIIVSGNDPFFTQLQYVLRPGRPTATYQPFVASADILKGFRRDEVFIVRPRYGTLPVPNRYYRLMRSD
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)


TTTTSSTTS

SS



TTTSSSS
GGG


STTS





SS
 .........1130.........1140.........1150.........1160.........1170......
Sequence VSVCLCNGCQHFFIAEDYEAECMRGSGCPLCRYRPGKQVSRSMKQILFDMETAAAA
Predicted secondary structure



























SS confidence























































Known secondary structure (DSSP) S

TTT

GGGSSSSTTT


SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D