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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8f5oB_

Fold library idPDB HeaderMoleculeTitle
c8f5oB_3.50PDB header: protein transportChain: B: PDB Molecule: intraflagellar transport protein 122b, putative;


Added to library: Sat Dec 24 09:48:37 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MFVYLSKRIAMPNGVKVTSIAWNDGQGWLACGGEKGLLKVLKVDGGPQGQRSGGLSSSQTLEGHDTTVDL
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Known secondary structure (DSSP)

GGG


TTT
TTT

STS





S



 .........80.........90.........100.........110.........120.........130.........140
Sequence VTWNQQYCKLTSSDVSGRIIVWVLHKGMWFEEMVNNRNSSRVVDFAWNPSGTKICITYEDGAVIVGGVDG
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Known secondary structure (DSSP) TTTT

SS

TT

SSS

TTS
TTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NRYWGRELPYKLAKVCWGADGNSILFGTATGEVYVHDASSGEHLSQVEIKCNDGKAPSPLAGLSWHPAWV
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Known secondary structure (DSSP)

SS

TTSSSS

SSS




SSS

SS



GGGS
 .........220.........230.........240.........250.........260.........270.........280
Sequence ERPEPLATLAVCYQSGKLQLMTSIGDETPCNVDRDLPAHFISWNPSGTVLAVTAATPATEENGPGIVTQF
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Known secondary structure (DSSP) S
SS



SS


SSSS
S




SS



TTSS

TTSTT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence FSTEGVHLRTLRVSGKQCGGITWEGGGLRVAIGVDSSVYFANVRPNYKYCYFKKTAVFAFTVPDKVEESV
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Known secondary structure (DSSP)
TT



S

TTSSTT



TT

TT
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence MFWNVNTNERRTKSVRGLQYMNACKDACVLISRPDTTQQQRMIQLVNAIGSPLETRFIDMELYTYDMNSS
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Known secondary structure (DSSP) TTTTTTTT
S
TTTT

SS


S



SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence AVVCCGDESIYIWQFRDPSTAVDALDPISMQASRAESQERVIHVCDLVRGDTAPTMKVRSALTNDLISAM
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Known secondary structure (DSSP)

SS
S
SSS


SSS
TS

SSS


TTS










SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence CVSETHMFVSLESGTLHVYQLSPLQLVSKYILFARAQSMSVNCNSTQLAVIHLGGITNVYCIEREKFSLV
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Known secondary structure (DSSP)
SSTTSSSS


SS

TTSSTTS

STT

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence PCKADTIDGVELKDVWNLRWAVDDPHRFAVMEKTRMLVYNHGVAEEPVQSCANLCKFKSLKIRTLQLDEL
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Known secondary structure (DSSP)


TT

S


SS
SS
B
TT

BBTTB






TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLDPERPRKDYIVDFEAQLLRDMRAVLRDGTAKEAYEFAESHNTKKLWELLAEHTLFQLDFTYAEVAFIH
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Known secondary structure (DSSP) TTSTTS

GGG
SS


TT
GGGT
 .........710.........720.........730.........740.........750.........760.........770
Sequence CKDYAAIQFVKRVRSLDDPKKQLAEVNAYYRRFDEAERLYKDVDRKDLALDLRYRLGDWFGVVRLVQEGA
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Known secondary structure (DSSP) T



TTTT
TT
T
S


 .........780.........790.........800.........810.........820.........830.........840
Sequence LLFQAWENIGDHYASRQKWSKAAQYYTQCRHYRKLARIFYIIEDYEMLTQLISMGEHDKELMVTLGNMLL
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Known secondary structure (DSSP) TT
T
T
TTGGGG
TT
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence TVGLAEEAAKAFIAANEPRMAVNGCVQVNMWNRAIALAKEHRLEDVGQLLEKYAKYLIHRERLTEAIELY
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Known secondary structure (DSSP) T
TT
TT
TT
TTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence RKAGKHDEAATLLAQLGKRAALRDALKAKKFYVLSALEVQKYRTTAIRTLDAAWRGAEAYHFLLMCQQQM
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Known secondary structure (DSSP) T

TT

TT

TTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ADRNFKAALVLAMRLIEYDDLVAPVDGYSLIALTAYLVKNFGLCSKAFARLEQAERNDEAPRPFADLARH
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Known secondary structure (DSSP) TTT
TTT
STTTTTS
TT
BS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IFMTHSPVDTSVDSVPCPTCGSFNKEWAQRCIKCQQPFNTCIVSGCAIVSEDGAWQCSVCHRKALEAVVD
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Known secondary structure (DSSP) S


B



TTT

TT
SB
SSS

B

B
SSS

B


GGG
SSS

T
 .........1130....
Sequence KYRNCPLCHTPRKG
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Known secondary structure (DSSP) T
SS
TTT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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