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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8f0rA_

Fold library idPDB HeaderMoleculeTitle
c8f0rA_2.90PDB header: membrane protein/inhibitorChain: A: PDB Molecule: sodium channel protein pafpc1,sodium channel protein type 9


Added to library: Sat Apr 15 11:26:47 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IRRVAISTMVQPIFSYFIMITILIHCIFMIMPATQTTYILELVFLSIYTIEVVVKVLARGFILHPFAYLR
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Known secondary structure (DSSP)
SS


S
SSSSTT
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence DPWNWLDFLVTLIGYITLVVLYALRAFRVLRSWRTVTIVPGWRTIVDALSLSITSLKDLVLLLLFSLSVF
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Known secondary structure (DSSP) S

TTSGGGGGGGGGGGGGSSTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ALIGLQLFMGNLKHKCVKHFPADGSWGNFTDERWFNYTSNSSHWYIPDDWIEYPLCGNSSGAGMCPPGYT
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Known secondary structure (DSSP) TTGGG



SSSTT
S


GGGB


TT
SS




SSTTS



TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence CLQGYGGNPNYGYTSFDTFGWAFLSVFRLVTLDYWEDLYQLALRSAGPWHILFFIIVVFYGTFCFLNFIL
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Known secondary structure (DSSP) SS
S

TTTTTS
SSSTSS
GGGTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence AVVVMSYTHMVKRADEEKVVLSPFFELFIAVIIVLNITFMALDHHDMNIEFERILRTGNYIFTSIYIVEA
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Known secondary structure (DSSP)


SST

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence VLKIIALSPKFYFKDSWNVFDFIIVVFAILELGLVFRSFRLLRVFRLAKFWPTLNNFMSVMTKSYGAFVN
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Known secondary structure (DSSP) S
S


GGGGT
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence VMYVMFLLLFIFAIIGMQLFGMNYIDNMERFPDGDLPRWNFTDFLHSFMIVFRALCGEWIESMWDCMLVG
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Known secondary structure (DSSP) TGGGSTTS


SS
SSST

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence DWSCIPFFVAVFFVGNLVILNLLIALLLNNYGWSNIRRVCFLLAKNKYFQKFVTAVLVITSVLLALEDIY
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Known secondary structure (DSSP)
TTT


T
TT

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LPQRPVLVNITLYVDYVLTAFFVIEMIIMLFAVGFKKYFTSKWYWLDFIVVVAYLLNFVLMCAGIEALQT
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Known secondary structure (DSSP) GGG

T
T



 .........640.........650.........660.........670.........680.........690.........700
Sequence LRLLRVFRLFRPLSKVNGMQVVTSTLVEAVPHIFNVILVGIFFWLVFAIMGVQLFAGKFYKCVDENSTVL
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Known secondary structure (DSSP) GGGGGGTSTT
TT


SSS
B
 .........710.........720.........730.........740.........750.........760.........770
Sequence SHEITMDRNDCLHENYTWENSPMNFDHVGNAYLSLLQVATFKGWLQIMNDAIDSREVHKQPIRETNIYMY
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Known secondary structure (DSSP)
TTT

BTT

SS

SSTSST

STTB


TTTTGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence LYFIFFIVFGSFFILKLFVCILIDIFRQQRRKAEGLSATDSRTQLIYRRAVMRTMSAKPVKRIPKNKIQG
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Known secondary structure (DSSP) TTTTTTTT

TT

S









 .........850.........860.........870.........880.........890.........900.........910
Sequence CIFDLVTNQAFDISIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLRHYYFTV
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Known secondary structure (DSSP) S

TT

TTGGGGS
 .........920.........930.........940.........950.........960.........970.........980
Sequence GWNIFDFVVVIISIVGMFLADLIETYSPTLFRVIRLARIGRILRLVKGAKGIRLLLLALRKALRTLFNVS
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Known secondary structure (DSSP)

GGGGGGGGTT
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FLLFVIMFVYAVFGMEFFMHIRDAGAIDDVYNFKTFGQSIILLFQLATSAGWDGVYFAIANEEDCRAPDH
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Known secondary structure (DSSP) SSS

S
TT

SSSSSSSTTTTTS

SS



BT
 .........1060.........1070.........1080.........1090.........1100.........1110....
Sequence ELGYPGNCGSRALGIAYLVSYLIITCLVVINMYAAVILDYVLEVYEDSKEGLTDDDYDMFFEVW
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Known secondary structure (DSSP) TTTB





TTTSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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