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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8ez9L_

Fold library idPDB HeaderMoleculeTitle
c8ez9L_5.67PDB header: dna binding proteinChain: L: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Jun 17 13:48:29 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AGVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNS
Predicted secondary structure
















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Known secondary structure (DSSP)
SS





SSTTTTTTT

ST
SSSS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IEFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMD
Predicted secondary structure










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Known secondary structure (DSSP) STTS
SS

TT





SSS

TTTTTTSTTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence EFKIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREP
Predicted secondary structure














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Known secondary structure (DSSP) SS
T
S
S
TT

TTS
TTGGGTTTSTTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence KLPVLAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTC
Predicted secondary structure














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Known secondary structure (DSSP)
GGGSS
TTSS
SSTTS
SSTT

STTT

GG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LLDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSN
Predicted secondary structure








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Known secondary structure (DSSP) GGT


TTS


SSTTTTTS
TTTTTT

SGGGGTSTTTTTTTTTS


T
 .........360.........370.........380.........390.........400.........410.........420
Sequence NKELSIAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLD
Predicted secondary structure





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Known secondary structure (DSSP) TT
TTTTTGGG


TT

SSTTTTTTTTT
GGGTTTTTT
T

 .........430.........440.........450.........460.........470.........480.........490
Sequence TVPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPV
Predicted secondary structure









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Known secondary structure (DSSP)


GGGTTTSS
T
S
S

 .........500.........510.........520.........530.........540.........550.........560
Sequence VLPTYKDYVDLFRHLLSSDQMMDSSESLNHLLYDEFVKSVLKIVEKLDLTLEIMIPTSDPAANLHPAKPK
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Known secondary structure (DSSP)



T
SSTT















SS




SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence DFSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGVPE
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Known secondary structure (DSSP) TTTTTS

TTSTTTTT

STT





 .........640.........650.........660.........670.........680.........690.........700
Sequence KYSCFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVG
Predicted secondary structure







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Known secondary structure (DSSP) GGG

TTS
S
STTTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LNALEEWSIYIDRHVMQPYYKDILPCLDGYLKTSALEAISLEEIRIRVVQMLGSLGGQINKNLLTVTSSD
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Known secondary structure (DSSP) TTS
GGGTGGGGGGGS







T
GGGSSSTT
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence EMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQ
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Known secondary structure (DSSP)


TT
S
SSSS






SS



GGGS
S
T
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence MPEGGQGAPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGI
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Known secondary structure (DSSP)
TTSS




TTTTT
S
TTSS


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence VDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYR
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Known secondary structure (DSSP)
TT



S
SS
S
GGGTS
SSTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGF
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Known secondary structure (DSSP)
GGGTTSTT



TTTGGGSS

S



TT
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PPSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGG
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Known secondary structure (DSSP) SSS



TGGG
SSGGGSTT


TTTTGGGS
GGGGTTTSSTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GCGQPSGILAQPTLLYSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIA
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Known secondary structure (DSSP) T


TTSS






TTSS
GGGGTTTSS

S

STT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence MHDIIAAEKSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIG
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Known secondary structure (DSSP) T
SSS




TT
SSGGGTTTT
TT
TTTTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence FNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSRLAAVVS
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Known secondary structure (DSSP) S
S

TSS

TTTTTS


TS
SSTTGGGG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence ACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGDERQCLPSLDLSCKQLASGLLELAFAFGG
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Known secondary structure (DSSP) T
GGGTS

SS
SS
TTTT
STTTTS





TSS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LCERLVSLLLNPAVLSTSVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGML
Predicted secondary structure

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Known secondary structure (DSSP)
T


B




S

BTTTS
TTTT
STTSSS

S
T
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEV
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Known secondary structure (DSSP) TTT
SSSSGGG
TTTS

TTS

S
SGGGS

TTTTT

TTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVD
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Known secondary structure (DSSP) GGG

SS
STTSSTT
TT
TT
TTTS
SSSSSS
TTS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence CMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVYEMFRKDDPR
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Known secondary structure (DSSP)

TT
SS
TTTTTS
S


SS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMGYYKILDVMY
Predicted secondary structure




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Known secondary structure (DSSP)
T

ST



TTSST
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence SRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHCAAYNCAISV
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Known secondary structure (DSSP) TTS
GGGGS
SS



BTTTBTT


S

T





SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence ICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKMDELNRHECMAPLTALVKHMHRSLPRDLPSWMKFLH
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Known secondary structure (DSSP) TTS
SSSS
TTTTTSS



TTT
S


SS




SSSS
TTTT






STT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence GKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVATILSWTGLA
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Known secondary structure (DSSP)
TTS
T

GGG
TTGGGTTTSSSSSSSSS

TT
S

 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDN
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Known secondary structure (DSSP)
SS

TT



SSSTTS



GGGTGGGS



SSS
SS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence SVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVMERKNILEES
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Known secondary structure (DSSP)



TT




S


TT
SGGG



SSS


SS
TTGGGTT
T
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence LCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCRVEGMTE
Predicted secondary structure







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Known secondary structure (DSSP) GGGTSS


STT
SS
GGG

TTTTT



STTS

S

ST
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCREQMYNILMWI
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Known secondary structure (DSSP) TTSS
SSSGGGSS
GGGGGGG


SSTTTTS

S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence HDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLALNSLYSPKI
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Known secondary structure (DSSP) TTTT


SS
TTTGGGGSS
TSTTT

SST

GGG
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence EVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDVLYRSYRHGDLPDIQIKHSSLITPLQAV
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Known secondary structure (DSSP) TTTS
TTTTS
S




S


















SS
TTS

T
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence AQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPFVSCIQDISCQHAA
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Known secondary structure (DSSP) TT


S
SS

SSS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence LLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLLPRLPPDVLRWVELAKLYRSIGEYDVLRGIFTSEIGT
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Known secondary structure (DSSP)
TT



TTS





STTT
T
SS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence KQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAEWKSLEYCSTASI
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Known secondary structure (DSSP)
TTT


S

SS


TS

 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence DSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQKAILELHYSQELSLL
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Known secondary structure (DSSP)


SS


TTTTSSTSS



S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence YLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVPLKR
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Known secondary structure (DSSP) TT
S
TT
TS
S
S
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence LLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLTPISSLIRSCKFSMKMKMIDSARKQNNFSLAM
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Known secondary structure (DSSP) T



SSSS



TTT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence KLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVSSYLSKNILAFRDQ
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTSS
STTTTSTTS
TTGGG
S
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence NILLGTTYRIIANALSSEPACLAEIEEDKARRILELSGSSSEDSEKVIAGLYQRAFQHLSEAVQAAEEEA
Predicted secondary structure



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Known secondary structure (DSSP)
STTTTSS

SS


GGGGGGGG


 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence AGVIDAYMTLADFCDQQLRKEEENASVIDSAELQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYP
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Known secondary structure (DSSP)
TTTSSTTSSSS




SS
SS
TTGG
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence EETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTS
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Known secondary structure (DSSP) GT
SSTT


SSGGGGGTTSTTGGGSS
T



SSG
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence TGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVNKKNIEKMYERMYAA
Predicted secondary structure




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Known secondary structure (DSSP) GGSSSTTS
S

SSS
S
STTTSS
GGGSSS
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence LGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPW
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Known secondary structure (DSSP) S

SST


GGGGTTTTTSSGGGTS
S


SS
TTGGG

SS
S


GGG
ST
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence MSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGE
Predicted secondary structure







































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Known secondary structure (DSSP) TSS
SS

TTS

B
S



SSS


TTTS
B
S



SSS

SSSS

BS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence DLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKA
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Known secondary structure (DSSP)

ST






SSSSB

SS
TS
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence AYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEA
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Known secondary structure (DSSP) T
SSSSSSTTTTSS
STTT



S
S
S
SS
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence FLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQ
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Known secondary structure (DSSP) TTB



GGGGGGT


S
BGGGTTSSSSS



S


SS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence FINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEK
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Known secondary structure (DSSP) TTTTS
TTTTT
TSSTTS
S



S

 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence NWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEPESGLSEETQVKC
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)


TTB
S

S
S

TTT
GGGTS
SB


 .........3650.........3660..
Sequence LMDQATDPNILGRTWEGWEPWM
Predicted secondary structure










SS confidence





















Known secondary structure (DSSP) T
TTS
TTS
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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