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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8ewiD_

Fold library idPDB HeaderMoleculeTitle
c8ewiD_3.50PDB header: ligaseChain: D: PDB Molecule: e3 ubiquitin-protein ligase ubr5;


Added to library: Sat Apr 22 11:35:18 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNLNSHPPLNVLEQATIKQCVVGPNHAAFLLEDGRVCRI
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Known secondary structure (DSSP)


BSSS
T




GGGS

SSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GFSVQPDRLSPVSLGEDLQWWPDKDGTKFICIGALYSELLAVSSKGELYQWKWSESEPYRNAQNPSLHHP
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Known secondary structure (DSSP)
TTT



SS



SS






SS

SS


SSSSS



SS
TT


T
 .........150.........160.........170.........180.........190.........200.........210
Sequence RATFLGLTNEKIVLLSANSIRATVATENNKVATWVDETLSSVASKLEHTAQTYSELQGERIVSLHCCALY
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Known secondary structure (DSSP) TT
SSS

SSTTS

SSSTTS
B




TT

S




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TCAQLENSLYWWGVVPFSQRKKMLEKARAKNKKPKSSAGISSMPNITVGTQVCLRNNPLYHAGAVAFSIS
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Known secondary structure (DSSP)
SS
S

GGGSS





SS







TT

TTSSS

S



 .........290.........300.........310.........320.........330.........340.........350
Sequence AGIPKVGVLMESVWNMNDSCRFQLRSPESLKNEEQWSLREVVFVEDVKNVPVGKVLKVDGAYVAVKFPGT
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Known secondary structure (DSSP) SSS

S



SSS





GGG



SS


TT



S
SSSS



TT
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SSNTNCQNSSGPDADPSSLLQDCRLLRIDELQVVKTGGTPKVPDCFQRTPKKLCIPEKTEILAVNVDSKG
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Known secondary structure (DSSP)

SSS




STT

TTSGGG

TT

SS
TTSS

S




SS


S

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VHAVLKTGNWVRYCIFDLATGKAEQENNFPTSSIAFLGQNERNVAIFTAGQESPIILRDGNGTIYPMAKD
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Known secondary structure (DSSP) TT
SSSS

SS

S
SS



SSS



TTSB


B
 .........500.........510.........520.........530.........540.........550.........560
Sequence CMGGIRDPDWLDLPPISSLGMGVHSLINLPANSTIKKKAAVIIMAVEKQTLMQHILRCDYEACRQYLMNL
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Known secondary structure (DSSP) SSSSB








B
SS
SSS
SS
S

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence EQAVVLEQNLQMLQTFISHRCDGNRNILHACVSVCFPTSNKVESKDRKANAHFILKLLCDSVVLQPYLRE
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Known secondary structure (DSSP) TSST


TTS

TS








SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLSAKDARGMTPFMSAVSGRAYPAAITILETAQKIAKAEISSSEKEEDVFMGMVCPSGTNPDDSPLYVLC
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Known secondary structure (DSSP) S


TTS

TT
SS

TT

S
TT

GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence CNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRTSPTAYCDCWEKCKCKTLI
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Known secondary structure (DSSP)
S

T
SS
B



TTTT
SSS

B
TTTTSS
SS

SB



TTTS

TTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence AGQKSARLDLLYRLLTATNLVTLPNSRGEHLLLFLVQTVARQTVEHCQYRPPRIREDSDMPDHDLEPPRF
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Known secondary structure (DSSP)


SSSTTTS

TTS

GGG








SSS









 .........850.........860.........870.........880.........890.........900.........910
Sequence AQLALERVLQDWNALKSMIMFGSQENKDPLSASSRIGHLLPEEQVYLNQQSGTIRLDCFTHCLIVKCTAD
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Known secondary structure (DSSP)
TTTSSS


SS
TTTS
TTS
S


TT

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence ILLLDTLLGTLVKELQNKYTPGRREEAIAVTMRFLRSVARVFVILSVEMASSKKKNNFIPQPIGKCKRVF
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Known secondary structure (DSSP) SS

SSTTS



GGG



S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QALLPYAVEELCNVAESLIVPVRMGIARPTAPFTLASTSIDAMQGSEELFSVEPLPPRPSSMLDEPLERT
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Known secondary structure (DSSP) TT



B






SS






S



SS




 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TNSSHANGAAQAPRSMQWAVRNNASSYLTSASSLARAYSIVIRQISDLMGLIPKYNHLVYSQIPAAVKLT
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Known secondary structure (DSSP) S



S

SS
S
GGGGGG





BTSTTTTTTSSS




 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence YQDAVNLQNYVEEKLIPTWNWMVSIMDSTEAQLRYGSALASAGDPGHPNHPLHASQNSARRMSARGDFLN
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Known secondary structure (DSSP) TTS
TTSTT
TTSGGG

S



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTETGQNHPFFRRSDSMTFLGCIPP
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Known secondary structure (DSSP) TT


SS




TTS



GGG
GGGS

TTT

TTSB

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSASSGKCLMEVTVDRNCLEVLPTKMSPPLT
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Known secondary structure (DSSP)
TTTS


TT


SS

S


B


SSTT


TTTS





SST


GG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEKLRNQQS
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Known secondary structure (DSSP) G





TTTS


TS
SSTTTSTT
T

TSS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RDLSLEVDRDRDLLIQQTMRQLNNHFGRRCATTPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNE
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Known secondary structure (DSSP)







SSST

SS

S



S





SSS


SSTSSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence KLPNLECIQNDNAPLFYQPGKRGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL
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Known secondary structure (DSSP)




GGG



S
S
SSSTT
B

SS

TT





B
T
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQ
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Known secondary structure (DSSP) T



ST
STT


S




GGGTSS


SSTT
SSS


TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence NVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDE
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Known secondary structure (DSSP) TTSSSSTTS
TT

S
SSS

T


S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence SGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCI
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Known secondary structure (DSSP) S
S
T

TS
SS

SSSTT
SS




SS


TTT
 .........1760.........1770.....
Sequence SRLYVPLYSSKQILKQKLLLAIKTK
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Known secondary structure (DSSP) T

SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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