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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8em1B_

Fold library idPDB HeaderMoleculeTitle
c8em1B_2.50PDB header: dna binding proteinChain: B: PDB Molecule: paqci, dna unbound;


Added to library: Sat Mar 25 10:44:20 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YDHNAEADFAASEVARMLVADPGLCYDAASLPASISASASYEPSAAGWPKADGLVSVLEGGTSTQRAIAL
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Known secondary structure (DSSP)

GGGTS
STT

S



TTS
SS

STT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EYKRPQEGIHGLLTAIGQAHGYLHKGYSGAAIVIPGRYSSHPTPAEYVRDVLNAISGSRAIAVFSYSPPD
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Known secondary structure (DSSP)

GGG
TTT
SS

SS
S
TT

TT



 .........150.........160.........170.........180.........190.........200.........210
Sequence TTSPTPFAGRIQCVRPLVFDAGRVHLRPANQGPKTQWVHMREGSTTRDAFFRFLQVAKRLSADPTAPRPT
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Known secondary structure (DSSP) TTSSSTTTT





TT

S
TT
S
SBSS



TTT


TT




 .........220.........230.........240.........250.........260.........270.........280
Sequence LRSELVAAIGRLAPGRDPIEYITNTADNKFLTKVWQFFWLEWLATPAVLTPWKSAPGARTRILREDGTDF
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Known secondary structure (DSSP)

SSSS
T



STS
TTTT










SSB
TTSSSB
 .........290.........300.........310.........320.........330.........340.........350
Sequence SQLWEGRVNSLKETIAGMLNISEAQGWEAFVDKQGVRARAHSYREDIDSALAQLRWIEDDGLPTDQGYRF
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Known secondary structure (DSSP)

SS
SSSSSTT







TT
B
TTS
B
 .........360.........370.........380.........390.........400.........410.........420
Sequence MTICERYGGANSRAAIDYMGATLIQTGRYASFLHYINRLSERKFAENPLAYTKPGPGGMPVFTEESYWEY
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Known secondary structure (DSSP) TTSTTSTT

TTTT

TTS


 .........430.........440.........450.........460.........470.........480..
Sequence LQDLETKLTDELRVMRKVVRTTFQVELTLLRNYGFVSSTRHRLGVGIPIDWEQVVQALNVDL
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Known secondary structure (DSSP) TS

B



TTTTTTSB
SS

BTTTBS
B




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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