PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c8e9iJ_

Fold library id	PDB Header	Molecule	Title
c8e9iJ_	2.80	PDB header: membrane protein	Chain: J: PDB Molecule: nadh-quinone oxidoreductase subunit j;

Links to external resources
Added to library: Sat Oct 15 11:45:08 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A R T S T S E A V V F W V V G T V A L V G A I G V V A A R K A V Y S A V F L A C T M I S L A V L Y I A Q D A P F L G V V Q I V V Y T G A V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M L F L F V L M L I G V D L T E S L V E T I K G H R I A A L I A G A G F G I L V I A G I G N V S V A G F S G L A A A N S G G N V E G L A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
B
S T T
S
G G G
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I F T R Y L W A F E L T S A L L I T A A L G A M V L A H R E R F E R R K T Q R E L A I E R F Q T G G H P T P L P N P G V Y A R H N S V D V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S T
G G G
T T T T T T T T T S S
B T T B
S T T

. . . . . . . . . 220 . . . . . . . . . 230

Sequence A R L P D G S E S P L S V S T I L P H R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T S
B
T T T S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	R	T	S	T	S	E	A	V	V	F	W	V	V	G	T	V	A	L	V	G	A	I	G	V	V	A	A	R	K	A	V	Y	S	A	V	F	L	A	C	T	M	I	S	L	A	V	L	Y	I	A	Q	D	A	P	F	L	G	V	V	Q	I	V	V	Y	T	G	A	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													S	B																						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	L	F	L	F	V	L	M	L	I	G	V	D	L	T	E	S	L	V	E	T	I	K	G	H	R	I	A	A	L	I	A	G	A	G	F	G	I	L	V	I	A	G	I	G	N	V	S	V	A	G	F	S	G	L	A	A	A	N	S	G	G	N	V	E	G	L	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T		S	S		B							S	T	T																						S		G	G	G					S					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	F	T	R	Y	L	W	A	F	E	L	T	S	A	L	L	I	T	A	A	L	G	A	M	V	L	A	H	R	E	R	F	E	R	R	K	T	Q	R	E	L	A	I	E	R	F	Q	T	G	G	H	P	T	P	L	P	N	P	G	V	Y	A	R	H	N	S	V	D	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	S																						T				G	G	G											T	T	T	T	T	T	T	T	T	S	S							B	T	T	B		S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	A	R	L	P	D	G	S	E	S	P	L	S	V	S	T	I	L	P	H	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B		T	T	S		B		T	T	T	S		S	S	S